Table 1 Viral IRES information involved in this study
From: Screening for functional IRESes using α-complementation system of β-galactosidase in Pichia pastoris
Virus abbreviation | Full name of the virus | Family | Viral host | GI | Position of IRES in viral genomic sequence |
|---|---|---|---|---|---|
BVDV | Bovine viral diarrhea virus | Flaviviridae | Cow | 9,836,967 | 1–385 |
CPMV | Cowpea mosaic virus | Comoviridae | Plant | 58,910 | 161–514 |
CrPV | Cricket paralysis virus | Dicistroviridae | Insect | 8,895,506 | 6025–6216 |
crTMV | Tobacco mosaic virus | Tobamovirus | Plant | 488,713 | 5456–5606 |
CSFV | Classical swine fever virus | Flaviviridae | Pig | 12,584,212 | 1–376 |
DCV | Drosophila C virus IRES2 | Dicistroviridae | Insect | 2,388,672 | 6080–6266 |
EMCV | Encephalomyocarditis virus | Picornaviridae | Human | 9,626,692 | 260–836 |
FMDV | Foot and mouth disease virus | Picornaviridae | Mammals | 61,076 | 252–716 |
F-MuLV-g | Friend murine leukemia virus | Retroviridae | Mouse | 61,544 | 1–357 |
F-MuLV-e | Friend murine leukemia virus | Retroviridae | Mouse | 61,544 | 5492–5780 |
GBV-B | Hepatitis virus insolated B | Flaviviridae | Primates | 13,162,187 | 23–448 |
GLV | Giardia lamblia virus | Totiviridae | Giardia | 1,352,866 | 1–369 |
HaMSV | Harvey murine sarcoma virus | Retroviridae | Rat | 207,672 | 25–543 |
HAV | Hepatitis A virus | Picornaviridae | Human | 329,585 | 150–720 |
HCV | Hepatitis C virus | Flaviviridae | Human | 12,831,192 | 1–344 |
HIV1 | Human immunodeficiency virus 1 GAG | Retroviridae | Human | 4,558,520 | 335–808 |
HTLV-1 | Human T cell Lymphotropic virus 1 | Retroviridae | Human | 221,866 | 354–621 |
KSHV | Kaposi-sarcoma-associated herpesvirus | Herpesviridae | Human | 2,065,526 | 123,206–122,709 |
MoMuLV | Moloney murine leukemia virus | Retroviridae | Mouse | 331,973 | 912–1040 |
PLRV | Potato leafroll virus | Luteoviridae | Plant | 222,301 | 1513–1728 |
PSIV | Plautia stali intestine virus | Dicistroviridae | Insect | 2,344,756 | 5949–6195 |
PTV-1 | Porcine teschovirus serotype 1 talfan | Picornaviridae | Pig | 13,111,645 | 146–434 |
PVY | Potato virus Y | Potyviridae | Plant | 61,450 | 1–187 |
RhPV | Rhopalosiphum padi ORF2 | Dicistroviridae | Insect | 2,911,298 | 6327–7112 |
RSV | Rous sarcoma virus | Retroviridae | Chicken | 2,801,459 | 230–382 |
SIV | Simian immunodeficiency virus | Retroviridae | Primate | 334,657 | 507–1043 |
TEV | Tobacco etch virus | Potyviridae | Plant | 335,201 | 2–147 |
TRV | Triatoma virus | Dicistroviridae | Insect | 6,003,484 | 1–551 |
TRV-IGR | Triatoma virus | Dicistroviridae | Insect | 6,003,484 | 5934–6111 |
TSV | Taura syndrome virus | Dicistroviridae | Penaeus vannamei | 14,701,764 | 6741–6952 |