Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions

Prem, Eva Maria; Stres, Blaz; Illmer, Paul; Wagner, Andreas Otto

doi:10.1186/s13068-020-01721-z

Biotechnology for Biofuels and Bioproducts

Table 1 List of genera defining the core microbiome of each substrate over all time points

From: Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions

Substrate	Mesophilic		Thermophilic
Substrate	Sample size	Core microbiome	Sample size	Core microbiome
Cont	9	ADurb.Bin120 (Anaerolineaceae)^a Anaerolineaceae (uncultured)^a Macellibacteroides Proteiniphilum Bacteroidetes_vadinHA17^a Candidatus Cloacimonas Fastidiosipila^a Methanosaeta Synergistaceae (uncultured) Cloacimonadaceae_W5	8	Defluviitoga^b Caldicoprobacter DTU014 (Clostridia)^b MBA03 (Clostridia) Firmicutes (uncultured)
Tryp	12	ADurb.Bin120 (Anaerolineaceae)^a Anaerolineaceae (uncultured)^a Macellibacteroides Proteiniphilum Bacteroidetes_vadinHA17^a Fastidiosipila^a Synergistaceae (uncultured_genus 1)	12	Defluviitoga^b Caldicoprobacter DTU014 (Clostridia)^b MBA03 (Clostridia) Syntrophaceticus
Tyr	12	ADurb.Bin120 (Anaerolineaceae)^a Anaerolineaceae (uncultured)^a Macellibacteroides Proteiniphilum Bacteroidetes_vadinHA17^a Fastidiosipila^a Christensenellaceae_R-7_group Synergistaceae (uncultured_genus 1)	12	Defluviitoga^b Caldicoprobacter DTU014 (Clostridia)^b Ruminiclostridium Syntrophaceticus
Phe	12	ADurb.Bin120 (Anaerolineaceae)^a Anaerolineaceae (uncultured)^a Proteiniphilum Bacteroidetes_vadinHA17^a Candidatus Cloacimonas Fastidiosipila^a Methanosaeta	12	Defluviitoga^b DTU014 (Clostridia)^b Syntrophaceticus
ME	18	ADurb.Bin120 (Anaerolineaceae)^a Anaerolineaceae (uncultured)^a Bacteroidetes_vadinHA17^a Candidatus Cloacimonas Fastidiosipila^a	17	Defluviitoga^b Caldicoprobacter DTU014 (Clostridia)^b Proteiniphilum Tepidanaerobacter Sporanaerobacter MBA03 (Clostridia)
Cas	18	ADurb.Bin120 (Anaerolineaceae)^a Anaerolineaceae (uncultured)^a Proteiniphilum Bacteroidetes_vadinHA17^a Candidatus Cloacimonas Fastidiosipila^a Sedimentibacter Ruminococcaceae (uncultured)	18	Defluviitoga^b Caldicoprobacter DTU014 (Clostridia)^b Tepidanaerobacter MBA03 (Clostridia) Gelria

Genera marked with ^a and ^b were part of every mesophilic and thermophilic core microbiome, respectively

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ISSN: 2731-3654

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