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Table 1 List of genera defining the core microbiome of each substrate over all time points

From: Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions

SubstrateMesophilicThermophilic
Sample sizeCore microbiomeSample sizeCore microbiome
Cont9ADurb.Bin120 (Anaerolineaceae)a
Anaerolineaceae (uncultured)a
Macellibacteroides
Proteiniphilum
Bacteroidetes_vadinHA17a
Candidatus Cloacimonas
Fastidiosipilaa
Methanosaeta
Synergistaceae (uncultured)
Cloacimonadaceae_W5
8Defluviitogab
Caldicoprobacter
DTU014 (Clostridia)b
MBA03 (Clostridia)
Firmicutes (uncultured)
Tryp12ADurb.Bin120 (Anaerolineaceae)a
Anaerolineaceae (uncultured)a
Macellibacteroides
Proteiniphilum
Bacteroidetes_vadinHA17a
Fastidiosipilaa
Synergistaceae (uncultured_genus 1)
12Defluviitogab
Caldicoprobacter
DTU014 (Clostridia)b
MBA03 (Clostridia)
Syntrophaceticus
Tyr12ADurb.Bin120 (Anaerolineaceae)a
Anaerolineaceae (uncultured)a
Macellibacteroides
Proteiniphilum
Bacteroidetes_vadinHA17a
Fastidiosipilaa
Christensenellaceae_R-7_group
Synergistaceae (uncultured_genus 1)
12Defluviitogab
Caldicoprobacter
DTU014 (Clostridia)b
Ruminiclostridium
Syntrophaceticus
Phe12ADurb.Bin120 (Anaerolineaceae)a
Anaerolineaceae (uncultured)a
Proteiniphilum
Bacteroidetes_vadinHA17a
Candidatus Cloacimonas
Fastidiosipilaa
Methanosaeta
12Defluviitogab
DTU014 (Clostridia)b
Syntrophaceticus
ME18ADurb.Bin120 (Anaerolineaceae)a
Anaerolineaceae (uncultured)a
Bacteroidetes_vadinHA17a
Candidatus Cloacimonas
Fastidiosipilaa
17Defluviitogab
Caldicoprobacter
DTU014 (Clostridia)b
Proteiniphilum
Tepidanaerobacter
Sporanaerobacter
MBA03 (Clostridia)
Cas18ADurb.Bin120 (Anaerolineaceae)a
Anaerolineaceae (uncultured)a
Proteiniphilum
Bacteroidetes_vadinHA17a
Candidatus Cloacimonas
Fastidiosipilaa
Sedimentibacter
Ruminococcaceae (uncultured)
18Defluviitogab
Caldicoprobacter
DTU014 (Clostridia)b
Tepidanaerobacter
MBA03 (Clostridia)
Gelria
  1. Genera marked with a and b were part of every mesophilic and thermophilic core microbiome, respectively