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Table 2 Summary of transcripts and proteins detected from RNA and TMT sequence data

From: Integrative transcriptome and proteome analyses provide new insights into different stages of Akebia trifoliata fruit cracking during ripening

  Transcriptome  Proteome
PM_PS PL_PM PM_PS PL_PM
Unique proteins/genes detected 100,329 100,329 2839 2839
Significantly DEGs/DAPs 4607 6598 190 50
Up- regulated 779 3815 75 20
Down- regulated 1924 879 98 13
Shared genes/proteins 1904 1904 17 17
Shared genes/proteins (upregulated) 1123 808 9 8
Shared genes/proteins (downregulated) 781 1096 8 9
Co-regulated DEGs-DAPs 14 4 14 4
Co-regulated DEGs-DAPs with the same trends 12 4 12 4