From: Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw
Chromosome (CH) | QTL regions (Mbp) | No of significant SNPs in QTL regions | Most significant p value of SNP in QTL regions | MAFa | R2 (%)b | Candidate genes |
---|---|---|---|---|---|---|
1 | CH1_29.5 ± 0.2 | 9 | 4.92E−08 | 0.179 | 22.6 | LOC_Os01g51260 (OsMYB26 TF) [79] |
2 | CH2_2.9 ± 0.2 | 2 | 8.04E−05 | 0.18 | 13.8 |  |
CH2_19.2 ± 0.2 | 2 | 8.94E−06 | 0.2 | 17.3 |  | |
CH2_24.4 ± 0.2 | 1 | 5.30E−05 | 0.13 | 13.1 |  | |
CH2_28.5 ± 0.2 | 14 | 4.06E−08 | 0.191 | 25.9 | LOC_Os02g46970 (4CL2) [82]; LOC_Os02g46780 (OsMYB58/63 L) [46] | |
6 | CH6_6.2 ± 0.2 | 1 | 3.61E−09 | 0.23 | 30.0 |  |
CH6_23.4 ± 0.2 | 2 | 1.37E−05 | 0.23 | 15.7 | LOC_Os06g39470 (BADH) | |
LOC_Os06g39390 (OsAT10) [16, 43]; LOC_Os06g39970 (CESA11) [83] | ||||||
7 | CH7_26.2 ± 0.2 | 9 | 2.78E−09 | 0.18 | 27.5 |  |
CH7_27.5 ± 0.2 | 12 | 3.34E−11 | 0.14 | 39.1 |  | |
CH7_29.4 ± 0.2 | 8 | 2.17E−11 | 0.14 | 36.0 | Os07g49370 (OsIRX9) [44]: | |
8 | CH8_2.1 ± 0.2 | 5 | 8.34E−11 | 0.18 | 30.1 |  |
CH8_26.8 ± 0.2 | 5 | 1.30E−08 | 0.09 | 26.8 |  | |
CH8_27.3 ± 0.2 | 3 | 6.38E−09 | 0.2 | 28.3 | LOC_Os08g43040 and LOC_Os08g43020(Orthologous to AT5G48930, HCT) | |
CH8_28.0 ± 0.2 | 5 | 4.15E−08 | 0.17 | 22.5 |  | |
11 | CH11_2.3 ± 0.2 | 6 | 2.05E−08 | 0.16 | 24.1 |  |
CH11_4.1 ± 0.2 | 8 | 7.51E−06 | 0.2 | 15.5 | LOC_Os11g07960 (Orthologous to AT5G48930, HCT) | |
CH11_5.1 ± 0.2 | 1 | 3.00E−06 | 0.18 | 18.1 |  | |
CH11_6.3 ± 0.2 | 9 | 5.56E−07 | 0.17 | 19.01 |  |