Table 2 Lignin QTL regions, the significant SNPs, and candidates in the QTL regions in 2014; the significant SNPs are selected by p value < 0.001 equal to Log10p value > 3.0
From: Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw
Chromosome (CH) | QTL regions (Mbp) | No of significant SNPs in QTL regions | Most significant p value of SNP in QTL regions | MAFa | R2 (%)b | Candidate genes |
|---|---|---|---|---|---|---|
1 | CH1_41.0 ± 0.2 | 9 | 8.96E−06 | 0.24 | 15.9 |  |
2 | CH2_5.5 ± 0.2 | 24 | 5.19E−06 | 0.47 | 17.4 |  |
3 | CH3_14.7 ± 0.2 | 1 | 8.21E−04 | 0.3 | 9.18 | 7 peroxidases |
8 | CH8_8.8 ± 0.2 | 3 | 3.98E−06 | 0.38 | 16.2 |  |
10 | CH10_19.4 ± 0.2 | 2 | 4.48E−04 | 0.44 | 9.5 |  |
|  | CH11_4.0 ± 0.2 | 2 | 6.44E−04 | 0.17 | 12.58 | HCT |
11 | CH11_18.8 ± 0.2 | 8 | 9.69E−05 | 0.38 | 12.6 | LOC_Os11g47390.1 putative laccase 14 |