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Table 1 Genome comparison among Thraustochytriaceae species

From: Low-temperature effects on docosahexaenoic acid biosynthesis in Schizochytrium sp. TIO01 and its proposed underlying mechanism

General features Schizochytrium TIO01 (This study) (GCA_004764695.1) Schizochytrium M209059 [12] (GCA_000818945.1) Aurantiochytrium acetophilum HS399 [26] (GCA_004332575.1) Aurantiochytrium sp. KH105 [27] (GCA_003116975.1) Aurantiochytrium sp. T66 [28] (GCA_001462505.1) Aurantiochytrium FCC1311 [29] (GCA_002897355.1) Thraustochytrium sp. ATCC 26185 [6] (GCA_002154235.1)
Scaffold
 N50 5,831,892 595,797 15,406 367,244 1,342,793 236,568 2139
 L50 4 23 1036 68 3 47 2470
 N90 1,915,581 144,465 5607 107,216 115,579 51,606 882
 L90 12 79 1770 215 42 177 7665
 Scaf max length 9,776,036 1,674,554 169,387 1,148,255 19,720,504 1,101,226 43,773
 Num of scaffolds 34 322 15,340 215 1847 2232 10,764
Contig
 N50 2,864,487 52,007 13,661 196,455 12,952 22,474 2139
 L50 9 230 1141 117 894 527 2469
 N90 1,558,441 14,718 1699 57,189 3515 5763 882
 L90 21 754 5607 384 3016 1792 7665
 Ctg max length 4,854,459 236,430 169,387 729,578 98,696 129,397 10,764
 Num of Contigs 67 1608 15,923 848 6833 4504 10,768
Other
 Plasmids 2
 Genes 12,392 11,520  
 Average GC% 44.95% 56.6% 45.19% 57.17% 62.83% 57.13% 64.04%
 Total base num 64,068,115 39,089,698 59,569,284 76,822,483 43,429,441 38,943,350 18,099,857