Table 1 Genome comparison among Thraustochytriaceae species
General features | Schizochytrium TIO01 (This study) (GCA_004764695.1) | Schizochytrium M209059 [12] (GCA_000818945.1) | Aurantiochytrium acetophilum HS399 [26] (GCA_004332575.1) | Aurantiochytrium sp. KH105 [27] (GCA_003116975.1) | Aurantiochytrium sp. T66 [28] (GCA_001462505.1) | Aurantiochytrium FCC1311 [29] (GCA_002897355.1) | Thraustochytrium sp. ATCC 26185 [6] (GCA_002154235.1) |
|---|---|---|---|---|---|---|---|
Scaffold | |||||||
 N50 | 5,831,892 | 595,797 | 15,406 | 367,244 | 1,342,793 | 236,568 | 2139 |
 L50 | 4 | 23 | 1036 | 68 | 3 | 47 | 2470 |
 N90 | 1,915,581 | 144,465 | 5607 | 107,216 | 115,579 | 51,606 | 882 |
 L90 | 12 | 79 | 1770 | 215 | 42 | 177 | 7665 |
 Scaf max length | 9,776,036 | 1,674,554 | 169,387 | 1,148,255 | 19,720,504 | 1,101,226 | 43,773 |
 Num of scaffolds | 34 | 322 | 15,340 | 215 | 1847 | 2232 | 10,764 |
Contig | |||||||
 N50 | 2,864,487 | 52,007 | 13,661 | 196,455 | 12,952 | 22,474 | 2139 |
 L50 | 9 | 230 | 1141 | 117 | 894 | 527 | 2469 |
 N90 | 1,558,441 | 14,718 | 1699 | 57,189 | 3515 | 5763 | 882 |
 L90 | 21 | 754 | 5607 | 384 | 3016 | 1792 | 7665 |
 Ctg max length | 4,854,459 | 236,430 | 169,387 | 729,578 | 98,696 | 129,397 | 10,764 |
 Num of Contigs | 67 | 1608 | 15,923 | 848 | 6833 | 4504 | 10,768 |
Other | |||||||
 Plasmids | 2 | – | – | – | – | – | – |
 Genes | 12,392 | – | – | – | – | 11,520 |  |
 Average GC% | 44.95% | 56.6% | 45.19% | 57.17% | 62.83% | 57.13% | 64.04% |
 Total base num | 64,068,115 | 39,089,698 | 59,569,284 | 76,822,483 | 43,429,441 | 38,943,350 | 18,099,857 |