TY - JOUR AU - Lan, E. I. AU - Dekishima, Y. AU - Chuang, D. S. AU - Liao, J. C. PY - 2013 DA - 2013// TI - Metabolic engineering of 2-pentanone synthesis in Escherichia coli JO - AIChE J VL - 59 UR - https://doi.org/10.1002/aic.14086 DO - 10.1002/aic.14086 ID - Lan2013 ER - TY - STD TI - Pandey A, Larroche C, Gnansounou E, Khanal SK, Dussap C-G, Ricke S: Biofuels: alternative feedstocks and conversion processes for the production of liquid and gaseous biofuels. 2019. ID - ref2 ER - TY - JOUR AU - Ben-Iwo, J. AU - Manovic, V. AU - Longhurst, P. PY - 2016 DA - 2016// TI - Biomass resources and biofuels potential for the production of transportation fuels in Nigeria JO - Renew Sustain Energy Rev VL - 63 UR - https://doi.org/10.1016/j.rser.2016.05.050 DO - 10.1016/j.rser.2016.05.050 ID - Ben-Iwo2016 ER - TY - JOUR AU - Naik, S. N. AU - Goud, V. V. AU - Rout, P. K. AU - Dalai, A. K. PY - 2010 DA - 2010// TI - Production of first and second generation biofuels: a comprehensive review JO - Renew Sustain Energy Rev VL - 14 UR - https://doi.org/10.1016/j.rser.2009.10.003 DO - 10.1016/j.rser.2009.10.003 ID - Naik2010 ER - TY - JOUR AU - Adegboye, M. F. AU - Lobb, B. AU - Babalola, O. O. AU - Doxey, A. C. AU - Ma, K. PY - 2018 DA - 2018// TI - Draft genome sequences of two novel cellulolytic streptomyces strains isolated from South African rhizosphere soil JO - Genome Announc VL - 6 UR - https://doi.org/10.1128/genomeA.00632-18 DO - 10.1128/genomeA.00632-18 ID - Adegboye2018 ER - TY - JOUR AU - Banerjee, G. AU - Scott-Craig, J. S. AU - Walton, J. D. PY - 2010 DA - 2010// TI - Improving enzymes for biomass conversion: a basic research perspective JO - Bioenergy Res VL - 3 UR - https://doi.org/10.1007/s12155-009-9067-5 DO - 10.1007/s12155-009-9067-5 ID - Banerjee2010 ER - TY - JOUR AU - Chubukov, V. AU - Mukhopadhyay, A. AU - Petzold, C. J. AU - Keasling, J. D. AU - Martín, H. G. PY - 2016 DA - 2016// TI - Synthetic and systems biology for microbial production of commodity chemicals JO - Syst Biol Appl VL - 2 UR - https://doi.org/10.1038/npjsba.2016.9 DO - 10.1038/npjsba.2016.9 ID - Chubukov2016 ER - TY - STD TI - Griffiths H: Bringing New Products from Marine Microorganisms to the Market. The marine microbiome. Springer; 2016. p. 435–452. ID - ref8 ER - TY - JOUR AU - Ahmed, A. A. Q. AU - Babalola, O. O. AU - McKay, T. PY - 2018 DA - 2018// TI - Cellulase- and xylanase-producing bacterial isolates with the ability to saccharify wheat straw and their potential use in the production of pharmaceuticals and chemicals from lignocellulosic materials JO - Waste Biomass Valorization VL - 9 UR - https://doi.org/10.1007/s12649-017-9849-5 DO - 10.1007/s12649-017-9849-5 ID - Ahmed2018 ER - TY - JOUR AU - Ceballos, R. AU - Chan, M. AU - Batchenkova, N. AU - Duffing-Romero, A. AU - Nelson, A. AU - Man, S. PY - 2015 DA - 2015// TI - Bioethanol: feedstock alternatives, pretreatments, lignin chemistry, and the potential for green value-added lignin co-products JO - J Environ Anal Chem. UR - https://doi.org/10.4172/2380-2391.1000164 DO - 10.4172/2380-2391.1000164 ID - Ceballos2015 ER - TY - JOUR AU - Taha, M. AU - Foda, M. AU - Shahsavari, E. AU - Aburto-Medina, A. AU - Adetutu, E. AU - Ball, A. PY - 2016 DA - 2016// TI - Commercial feasibility of lignocellulose biodegradation: possibilities and challenges JO - Curr Opin Biotechnol VL - 38 UR - https://doi.org/10.1016/j.copbio.2016.02.012 DO - 10.1016/j.copbio.2016.02.012 ID - Taha2016 ER - TY - JOUR AU - Liu, G. AU - Zhang, J. AU - Bao, J. PY - 2016 DA - 2016// TI - Cost evaluation of cellulase enzyme for industrial-scale cellulosic ethanol production based on rigorous Aspen Plus modeling JO - Bioprocess Biosyst Eng VL - 39 UR - https://doi.org/10.1007/s00449-015-1497-1 DO - 10.1007/s00449-015-1497-1 ID - Liu2016 ER - TY - JOUR AU - Aro, E. -. M. PY - 2016 DA - 2016// TI - From first generation biofuels to advanced solar biofuels JO - Ambio VL - 45 UR - https://doi.org/10.1007/s13280-015-0730-0 DO - 10.1007/s13280-015-0730-0 ID - Aro2016 ER - TY - STD TI - Abomohra AE-F, Jin W, Tu R, Han S-F, Eid M, Eladel H. Microalgal biomass production as a sustainable feedstock for biodiesel: current status and perspectives. Renew Sustain Energy Rev. 2016, 64:596–606. ID - ref14 ER - TY - JOUR AU - Gaida, S. M. AU - Liedtke, A. AU - Jentges, A. H. W. AU - Engels, B. AU - Jennewein, S. PY - 2016 DA - 2016// TI - Metabolic engineering of Clostridium cellulolyticum for the production of n-butanol from crystalline cellulose JO - Microb Cell Fact UR - https://doi.org/10.1186/s12934-12015-10406-12932 DO - 10.1186/s12934-12015-10406-12932 ID - Gaida2016 ER - TY - JOUR AU - Peralta-Yahya, P. P. AU - Zhang, F. AU - Cardayre, S. B. AU - Keasling, J. D. PY - 2012 DA - 2012// TI - Microbial engineering for the production of advanced biofuels JO - Nature VL - 488 UR - https://doi.org/10.1038/nature11478 DO - 10.1038/nature11478 ID - Peralta-Yahya2012 ER - TY - JOUR AU - Pirie, C. M. AU - Mey, M. AU - Prather, K. L. J. AU - Ajikumar, P. K. PY - 2013 DA - 2013// TI - Integrating the protein and metabolic engineering toolkits for next-generation chemical biosynthesis JO - ACS Chem Biol VL - 8 UR - https://doi.org/10.1021/cb300634b DO - 10.1021/cb300634b ID - Pirie2013 ER - TY - JOUR AU - Simeonidis, E. AU - Price, N. D. PY - 2015 DA - 2015// TI - Genome-scale modeling for metabolic engineering JO - J Ind Microbiol Biotechnol VL - 42 UR - https://doi.org/10.1007/s10295-014-1576-3 DO - 10.1007/s10295-014-1576-3 ID - Simeonidis2015 ER - TY - JOUR AU - Lee, S. K. AU - Chou, H. AU - Ham, T. S. AU - Lee, T. S. AU - Keasling, J. D. PY - 2008 DA - 2008// TI - Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels JO - Curr Opin Biotechnol VL - 19 UR - https://doi.org/10.1016/j.copbio.2008.10.014 DO - 10.1016/j.copbio.2008.10.014 ID - Lee2008 ER - TY - JOUR AU - Jönsson, L. J. AU - Alriksson, B. AU - Nilvebrant, N. -. O. PY - 2013 DA - 2013// TI - Bioconversion of lignocellulose: inhibitors and detoxification JO - Biotechnol Biofuels VL - 6 UR - https://doi.org/10.1186/1754-6834-6-16 DO - 10.1186/1754-6834-6-16 ID - Jönsson2013 ER - TY - STD TI - Monshizadeh A. Influence of the molecular weight of cellulose on the solubility in ionic liquid-water mixtures. 2015. ID - ref21 ER - TY - STD TI - Gupta VK, Tuohy K. Microbial enzymes in bioconversions of biomass: Springer; 2016. ID - ref22 ER - TY - JOUR AU - Nanda, S. AU - Mohammad, J. AU - Reddy, S. N. AU - Kozinski, J. A. AU - Dalai, A. K. PY - 2014 DA - 2014// TI - Pathways of lignocellulosic biomass conversion to renewable fuels JO - Biomass Conversion Biorefinery VL - 4 UR - https://doi.org/10.1007/s13399-013-0097-z DO - 10.1007/s13399-013-0097-z ID - Nanda2014 ER - TY - JOUR AU - Limayem, A. AU - Ricke, S. C. PY - 2012 DA - 2012// TI - Lignocellulosic biomass for bioethanol production: current perspectives, potential issues and future prospects JO - Prog Energy Combust Sci VL - 38 UR - https://doi.org/10.1016/j.pecs.2012.03.002 DO - 10.1016/j.pecs.2012.03.002 ID - Limayem2012 ER - TY - JOUR AU - Sarkar, N. AU - Ghosh, S. K. AU - Bannerjee, S. AU - Aikat, K. PY - 2012 DA - 2012// TI - Bioethanol production from agricultural wastes: an overview JO - Renewable Energy VL - 37 UR - https://doi.org/10.1016/j.renene.2011.06.045 DO - 10.1016/j.renene.2011.06.045 ID - Sarkar2012 ER - TY - STD TI - Safaai M, Sharliza N, Azizan A, Ramli M, Kamarludin C, Norsyarahah S. Overview on mechanical-chemical ionic liquid pretreatment study on bioethanol–based lignocellulosics biomass. Adv Mater Res. 2015; pp. 260–265. ID - ref26 ER - TY - JOUR AU - Obeng, E. M. AU - Adam, S. N. N. AU - Budiman, C. AU - Ongkudon, C. M. AU - Maas, R. AU - Jose, J. PY - 2017 DA - 2017// TI - Lignocellulases: a review of emerging and developing enzymes, systems, and practices JO - Bioresources Bioprocessing VL - 4 UR - https://doi.org/10.1186/s40643-017-0146-8 DO - 10.1186/s40643-017-0146-8 ID - Obeng2017 ER - TY - JOUR AU - Chanliaud, E. AU - Silva, J. AU - Strongitharm, B. AU - Jeronimidis, G. AU - Gidley, M. J. PY - 2004 DA - 2004// TI - Mechanical effects of plant cell wall enzymes on cellulose/xyloglucan composites JO - Plant J VL - 38 UR - https://doi.org/10.1111/j.1365-313X.2004.02018.x DO - 10.1111/j.1365-313X.2004.02018.x ID - Chanliaud2004 ER - TY - JOUR AU - Babalola, O. O. PY - 2007 DA - 2007// TI - Pectinase and cellulase enhance the control of Abutilon theophrasti by Colletotrichum coccodes JO - Biocontrol Sci Tech VL - 17 UR - https://doi.org/10.1080/09583150600828783 DO - 10.1080/09583150600828783 ID - Babalola2007 ER - TY - JOUR AU - Lynd, L. R. AU - Cushman, J. H. AU - Nichols, R. J. AU - Wyman, C. E. PY - 1991 DA - 1991// TI - Fuel ethanol from cellulosic biomass JO - Science VL - 251 UR - https://doi.org/10.1126/science.251.4999.1318 DO - 10.1126/science.251.4999.1318 ID - Lynd1991 ER - TY - STD TI - Rowell RM, Schultz TP, Narayan R. Emerging technologies for materials and chemicals from biomass; 1992. ID - ref31 ER - TY - JOUR AU - Tsegaye, B. AU - Balomajumder, C. AU - Roy, P. PY - 2019 DA - 2019// TI - Microbial delignification and hydrolysis of lignocellulosic biomass to enhance biofuel production: an overview and future prospect JO - In VL - 43 ID - Tsegaye2019 ER - TY - STD TI - Atreya ME. Engineering cellulase enzymes for bioenergy. 2015. ID - ref33 ER - TY - JOUR AU - Wilson, D. B. PY - 2009 DA - 2009// TI - Cellulases and biofuels JO - Curr Opin Biotechnol. VL - 20 UR - https://doi.org/10.1016/j.copbio.2009.05.007 DO - 10.1016/j.copbio.2009.05.007 ID - Wilson2009 ER - TY - STD TI - Souza WRd. Microbial degradation of lignocellulosic biomass. 2013. ID - ref35 ER - TY - JOUR AU - Andlar, M. AU - Rezić, T. AU - Marđetko, N. AU - Kracher, D. AU - Ludwig, R. AU - Šantek, B. PY - 2018 DA - 2018// TI - Lignocellulose degradation: an overview of fungi and fungal enzymes involved in lignocellulose degradation JO - Eng Life Sci. VL - 18 UR - https://doi.org/10.1002/elsc.201800039 DO - 10.1002/elsc.201800039 ID - Andlar2018 ER - TY - JOUR AU - Uchida, H. AU - Kusakabe, I. AU - Kawabata, Y. AU - Ono, T. AU - Murakami, K. PY - 1992 DA - 1992// TI - Production of xylose from xylan with intracellular enzyme system of Aspergillus niger 5–16 JO - J Ferment Bioeng VL - 74 UR - https://doi.org/10.1016/0922-338X(92)90075-6 DO - 10.1016/0922-338X(92)90075-6 ID - Uchida1992 ER - TY - JOUR AU - Geiser, E. AU - Wierckx, N. AU - Zimmermann, M. AU - Blank, L. M. PY - 2013 DA - 2013// TI - Identification of an endo-1, 4-beta-xylanase of Ustilago maydis JO - BMC Biotechnol VL - 13 UR - https://doi.org/10.1186/1472-6750-13-59 DO - 10.1186/1472-6750-13-59 ID - Geiser2013 ER - TY - JOUR AU - Juturu, V. AU - Wu, J. C. PY - 2014 DA - 2014// TI - Microbial cellulases: engineering, production and applications JO - Renew Sustain Energy Rev VL - 33 UR - https://doi.org/10.1016/j.rser.2014.01.077 DO - 10.1016/j.rser.2014.01.077 ID - Juturu2014 ER - TY - STD TI - Wilson DB. Processive cellulases in: direct microbial conversion of biomass to advanced biofuels. department of molecular biology and genetics, Cornell University, Ithaca. 2015. pp. 83–89. ID - ref40 ER - TY - JOUR AU - Nam, K. H. AU - Sung, M. W. AU - Hwang, K. Y. PY - 2010 DA - 2010// TI - Structural insights into the substrate recognition properties of β-glucosidase JO - Biochem Biophys Res Commun. VL - 391 UR - https://doi.org/10.1016/j.bbrc.2009.12.038 DO - 10.1016/j.bbrc.2009.12.038 ID - Nam2010 ER - TY - JOUR AU - Biely, P. AU - Vršanská, M. AU - Tenkanen, M. AU - Kluepfel, D. PY - 1997 DA - 1997// TI - Endo-β-1, 4-xylanase families: differences in catalytic properties JO - J Biotechnol VL - 57 UR - https://doi.org/10.1016/S0168-1656(97)00096-5 DO - 10.1016/S0168-1656(97)00096-5 ID - Biely1997 ER - TY - JOUR AU - Brink, J. AU - Vries, R. P. PY - 2011 DA - 2011// TI - Fungal enzyme sets for plant polysaccharide degradation JO - Appl Microbiol Biotechnol VL - 91 UR - https://doi.org/10.1007/s00253-011-3473-2 DO - 10.1007/s00253-011-3473-2 ID - Brink2011 ER - TY - STD TI - de Souza WR. Microbial degradation of lignocellulosic biomass. Sustainable degradation lignocellulosic biomass-techniques, applications commercialization 2013. pp. 207–247. ID - ref44 ER - TY - STD TI - Biswas R. Bioprocessing of renewable resources to commodity bioproducts 1 ed VS Bisaria and A Kondo. Production of Cellulolytic Enzymes. Wiley; 2014. ID - ref45 ER - TY - JOUR AU - Bhardwaj, N. AU - Kumar, B. AU - Verma, P. PY - 2019 DA - 2019// TI - A detailed overview of xylanases: an emerging biomolecule for current and future prospective JO - Bioresources Bioprocessing VL - 6 UR - https://doi.org/10.1186/s40643-019-0276-2 DO - 10.1186/s40643-019-0276-2 ID - Bhardwaj2019 ER - TY - JOUR AU - Benedetti, M. AU - Locci, F. AU - Gramegna, G. AU - Sestili, F. AU - Savatin, D. V. PY - 2019 DA - 2019// TI - Green production and biotechnological applications of cell wall lytic enzymes JO - Appl Sci VL - 9 UR - https://doi.org/10.3390/app9235012 DO - 10.3390/app9235012 ID - Benedetti2019 ER - TY - JOUR AU - Garg, G. AU - Singh, A. AU - Kaur, A. AU - Singh, R. AU - Kaur, J. AU - Mahajan, R. PY - 2016 DA - 2016// TI - Microbial pectinases: an ecofriendly tool of nature for industries JO - Biotech VL - 6 ID - Garg2016 ER - TY - JOUR AU - Rha, E. AU - Park, H. J. AU - Kim, M. O. AU - Chung, Y. R. AU - Lee, C. -. W. AU - Kim, J. W. PY - 2001 DA - 2001// TI - Expression of exo-polygalacturonases in Botrytis cinerea JO - FEMS Microbiol Lett VL - 201 UR - https://doi.org/10.1111/j.1574-6968.2001.tb10740.x DO - 10.1111/j.1574-6968.2001.tb10740.x ID - Rha2001 ER - TY - STD TI - Mojsov K. Aspergillus enzymes for food industries. New and future developments in microbial biotechnology and bioengineering. Elsevier; 2016. pp. 215–222. ID - ref50 ER - TY - JOUR AU - Eijsink, V. G. AU - Petrovic, D. AU - Forsberg, Z. AU - Mekasha, S. AU - Røhr, Å. K. AU - Várnai, A. AU - Bissaro, B. AU - Vaaje-Kolstad, G. PY - 2019 DA - 2019// TI - On the functional characterization of lytic polysaccharide monooxygenases (LPMOs) JO - Biotechnol Biofuels VL - 12 UR - https://doi.org/10.1186/s13068-019-1392-0 DO - 10.1186/s13068-019-1392-0 ID - Eijsink2019 ER - TY - JOUR AU - Meier, K. K. AU - Jones, S. M. AU - Kaper, T. AU - Hansson, H. AU - Koetsier, M. J. AU - Karkehabadi, S. AU - Solomon, E. I. AU - Sandgren, M. AU - Kelemen, B. PY - 2017 DA - 2017// TI - Oxygen activation by Cu LPMOs in recalcitrant carbohydrate polysaccharide conversion to monomer sugars JO - Chem Rev VL - 118 UR - https://doi.org/10.1021/acs.chemrev.7b00421 DO - 10.1021/acs.chemrev.7b00421 ID - Meier2017 ER - TY - JOUR AU - Loose, J. S. AU - Arntzen, M. Ø. AU - Bissaro, B. AU - Ludwig, R. AU - Eijsink, V. G. AU - Vaaje-Kolstad, G. PY - 2018 DA - 2018// TI - Multipoint precision binding of substrate protects lytic polysaccharide monooxygenases from self-destructive off-pathway processes JO - Biochemistry VL - 57 UR - https://doi.org/10.1021/acs.biochem.8b00484 DO - 10.1021/acs.biochem.8b00484 ID - Loose2018 ER - TY - JOUR AU - Du, L. AU - Ma, L. AU - Ma, Q. AU - Guo, G. AU - Han, X. AU - Xiao, D. PY - 2018 DA - 2018// TI - Hydrolytic boosting of lignocellulosic biomass by a fungal lytic polysaccharide monooxygenase, AnLPMO15g from Aspergillus niger JO - Ind Crops Prod VL - 126 UR - https://doi.org/10.1016/j.indcrop.2018.10.029 DO - 10.1016/j.indcrop.2018.10.029 ID - Du2018 ER - TY - JOUR AU - Raguz, S. AU - Yaguea, E. AU - Wood, D. AU - Thurston, C. PY - 1992 DA - 1992// TI - Isolation and characterization of a cellulose-growth-specific gene from Agaricus bisporus JO - Gene VL - 119 UR - https://doi.org/10.1016/0378-1119(92)90270-Y DO - 10.1016/0378-1119(92)90270-Y ID - Raguz1992 ER - TY - JOUR AU - Armesilla, A. L. AU - Thurston, C. F. AU - Yagüe, E. PY - 1994 DA - 1994// TI - CEL1: a novel cellulose binding protein secreted by Agaricus bisporus during growth on crystalline cellulose JO - FEMS Microbiol Lett VL - 116 UR - https://doi.org/10.1111/j.1574-6968.1994.tb06718.x DO - 10.1111/j.1574-6968.1994.tb06718.x ID - Armesilla1994 ER - TY - JOUR AU - Ezeilo, U. R. AU - Zakaria, I. I. AU - Huyop, F. AU - Wahab, R. A. PY - 2017 DA - 2017// TI - Enzymatic breakdown of lignocellulosic biomass: the role of glycosyl hydrolases and lytic polysaccharide monooxygenases JO - Biotechnol Biotechnol Equip VL - 31 ID - Ezeilo2017 ER - TY - JOUR AU - Cantarel, B. L. AU - Coutinho, P. M. AU - Rancurel, C. AU - Bernard, T. AU - Lombard, V. AU - Henrissat, B. PY - 2009 DA - 2009// TI - The carbohydrate-active enzymes database (CAZy): an expert resource for glycogenomics JO - Nucleic Acids Res. VL - 37 UR - https://doi.org/10.1093/nar/gkn663 DO - 10.1093/nar/gkn663 ID - Cantarel2009 ER - TY - JOUR AU - Forsberg, Z. AU - Mackenzie, A. K. AU - Sørlie, M. AU - Røhr, Å. K. AU - Helland, R. AU - Arvai, A. S. AU - Vaaje-Kolstad, G. AU - Eijsink, V. G. PY - 2014 DA - 2014// TI - Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases JO - Proc Natl Acad Sci VL - 111 UR - https://doi.org/10.1073/pnas.1402771111 DO - 10.1073/pnas.1402771111 ID - Forsberg2014 ER - TY - JOUR AU - Phillips, C. M. AU - Beeson, W. T. AU - Cate, J. H. AU - Marletta, M. A. PY - 2011 DA - 2011// TI - Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa JO - ACS Chem Biol VL - 6 UR - https://doi.org/10.1021/cb200351y DO - 10.1021/cb200351y ID - Phillips2011 ER - TY - JOUR AU - Levasseur, A. AU - Drula, E. AU - Lombard, V. AU - Coutinho, P. M. AU - Henrissat, B. PY - 2013 DA - 2013// TI - Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes JO - Biotechnol Biofuels VL - 6 UR - https://doi.org/10.1186/1754-6834-6-41 DO - 10.1186/1754-6834-6-41 ID - Levasseur2013 ER - TY - JOUR AU - Hemsworth, G. R. AU - Henrissat, B. AU - Davies, G. J. AU - Walton, P. H. PY - 2014 DA - 2014// TI - Discovery and characterization of a new family of lytic polysaccharide monooxygenases JO - Nat Chem Biol VL - 10 UR - https://doi.org/10.1038/nchembio.1417 DO - 10.1038/nchembio.1417 ID - Hemsworth2014 ER - TY - JOUR AU - Leggio, L. L. AU - Simmons, T. J. AU - Poulsen, J. C. N. AU - Frandsen, K. E. AU - Hemsworth, G. R. AU - Stringer, M. A. AU - Freiesleben, P. AU - Tovborg, M. AU - Johansen, K. S. AU - Maria, L. PY - 2015 DA - 2015// TI - Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase JO - Nat Commun VL - 6 UR - https://doi.org/10.1038/ncomms6961 DO - 10.1038/ncomms6961 ID - Leggio2015 ER - TY - JOUR AU - Walton, P. H. AU - Davies, G. J. PY - 2016 DA - 2016// TI - On the catalytic mechanisms of lytic polysaccharide monooxygenases JO - Curr Opin Chem Biol VL - 31 UR - https://doi.org/10.1016/j.cbpa.2016.04.001 DO - 10.1016/j.cbpa.2016.04.001 ID - Walton2016 ER - TY - JOUR AU - Agger, J. W. AU - Isaksen, T. AU - Várnai, A. AU - Vidal-Melgosa, S. AU - Willats, W. G. AU - Ludwig, R. AU - Horn, S. J. AU - Eijsink, V. G. AU - Westereng, B. PY - 2014 DA - 2014// TI - Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation JO - Proc Natl Acad Sci VL - 111 UR - https://doi.org/10.1073/pnas.1323629111 DO - 10.1073/pnas.1323629111 ID - Agger2014 ER - TY - JOUR AU - Fanuel, M. AU - Garajova, S. AU - Ropartz, D. AU - McGregor, N. AU - Brumer, H. AU - Rogniaux, H. AU - Berrin, J. -. G. PY - 2017 DA - 2017// TI - The Podospora anserina lytic polysaccharide monooxygenase Pa LPMO9H catalyzes oxidative cleavage of diverse plant cell wall matrix glycans JO - Biotechnol Biofuels VL - 10 UR - https://doi.org/10.1186/s13068-017-0749-5 DO - 10.1186/s13068-017-0749-5 ID - Fanuel2017 ER - TY - JOUR AU - Frommhagen, M. AU - Koetsier, M. J. AU - Westphal, A. H. AU - Visser, J. AU - Hinz, S. W. AU - Vincken, J. -. P. AU - Berkel, W. J. AU - Kabel, M. A. AU - Gruppen, H. PY - 2016 DA - 2016// TI - Lytic polysaccharide monooxygenases from Myceliophthora thermophila C1 differ in substrate preference and reducing agent specificity JO - Biotechnol Biofuels VL - 9 UR - https://doi.org/10.1186/s13068-016-0594-y DO - 10.1186/s13068-016-0594-y ID - Frommhagen2016 ER - TY - JOUR AU - Jagadeeswaran, G. AU - Gainey, L. AU - Prade, R. AU - Mort, A. J. PY - 2016 DA - 2016// TI - A family of AA9 lytic polysaccharide monooxygenases in Aspergillus nidulans is differentially regulated by multiple substrates and at least one is active on cellulose and xyloglucan JO - Appl Microbiol Biotechnol VL - 100 UR - https://doi.org/10.1007/s00253-016-7505-9 DO - 10.1007/s00253-016-7505-9 ID - Jagadeeswaran2016 ER - TY - JOUR AU - Sorek, N. AU - Yeats, T. H. AU - Szemenyei, H. AU - Youngs, H. AU - Somerville, C. R. PY - 2014 DA - 2014// TI - The implications of lignocellulosic biomass chemical composition for the production of advanced biofuels JO - Bioscience UR - https://doi.org/10.1093/biosci/bit1037 DO - 10.1093/biosci/bit1037 ID - Sorek2014 ER - TY - JOUR AU - Scharf, M. E. PY - 2015 DA - 2015// TI - Termites as targets and models for biotechnology JO - Annu Rev Entomol VL - 60 UR - https://doi.org/10.1146/annurev-ento-010814-020902 DO - 10.1146/annurev-ento-010814-020902 ID - Scharf2015 ER - TY - JOUR AU - Yang, B. AU - Wyman, C. E. PY - 2008 DA - 2008// TI - Pretreatment: the key to unlocking low-cost cellulosic ethanol JO - Biofuels Bioproducts Biorefining. VL - 2 UR - https://doi.org/10.1002/bbb.49 DO - 10.1002/bbb.49 ID - Yang2008 ER - TY - JOUR AU - Gonzalo, G. AU - Colpa, D. I. AU - Habib, M. H. M. AU - Fraaije, M. W. PY - 2016 DA - 2016// TI - Bacterial enzymes involved in lignin degradation JO - J Biotechnol VL - 236 UR - https://doi.org/10.1016/j.jbiotec.2016.08.011 DO - 10.1016/j.jbiotec.2016.08.011 ID - Gonzalo2016 ER - TY - JOUR AU - Sindhu, R. AU - Binod, P. AU - Pandey, A. PY - 2016 DA - 2016// TI - Biological pretreatment of lignocellulosic biomass–an overview JO - Biores Technol VL - 199 UR - https://doi.org/10.1016/j.biortech.2015.08.030 DO - 10.1016/j.biortech.2015.08.030 ID - Sindhu2016 ER - TY - JOUR AU - Davidi, L. AU - Moraïs, S. AU - Artzi, L. AU - Knop, D. AU - Hadar, Y. AU - Arfi, Y. AU - Bayer, E. A. PY - 2016 DA - 2016// TI - Toward combined delignification and saccharification of wheat straw by a laccase-containing designer cellulosome JO - Syst Biol Appl VL - 113 ID - Davidi2016 ER - TY - STD TI - Salwan R, Sharma V. The role of actinobacteria in the production of industrial enzymes. New and future developments in microbial biotechnology and bioengineering. Elsevier; 2018. pp. 165–177. ID - ref75 ER - TY - STD TI - Bode W, Huber R. Natural protein proteinase inhibitors and their interaction with proteinases. EJB Rev. Springer; 1993. pp.43–61. ID - ref76 ER - TY - JOUR AU - Passari, A. K. AU - Mishra, V. K. AU - Singh, G. AU - Singh, P. AU - Kumar, B. AU - Gupta, V. K. AU - Sarma, R. K. AU - Saikia, R. AU - Singh, B. P. PY - 2017 DA - 2017// TI - Insights into the functionality of endophytic actinobacteria with a focus on their biosynthetic potential and secondary metabolites production JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/s41598-017-12235-4 DO - 10.1038/s41598-017-12235-4 ID - Passari2017 ER - TY - JOUR AU - Miyashita, K. AU - Fujii, T. AU - Sawada, Y. PY - 1991 DA - 1991// TI - Molecular cloning and characterization of chitinase genes from Streptomyces lividans 66 JO - Microbiology VL - 137 ID - Miyashita1991 ER - TY - JOUR AU - Techapun, C. AU - Poosaran, N. AU - Watanabe, M. AU - Sasaki, K. PY - 2003 DA - 2003// TI - Thermostable and alkaline-tolerant microbial cellulase-free xylanases produced from agricultural wastes and the properties required for use in pulp bleaching bioprocesses: a review JO - Process Biochem VL - 38 UR - https://doi.org/10.1016/S0032-9592(02)00331-X DO - 10.1016/S0032-9592(02)00331-X ID - Techapun2003 ER - TY - JOUR AU - Majumdar, S. AU - Lukk, T. AU - Solbiati, J. O. AU - Bauer, S. AU - Nair, S. K. AU - Cronan, J. E. AU - Gerlt, J. A. PY - 2014 DA - 2014// TI - Roles of small laccases from Streptomyces in lignin degradation JO - Biochemistry VL - 53 UR - https://doi.org/10.1021/bi500285t DO - 10.1021/bi500285t ID - Majumdar2014 ER - TY - JOUR AU - Doori, M. AU - Hunter, I. PY - 2017 DA - 2017// TI - Theoretical and practical studies on the metabolic engineering of streptomyces for production of butanols JO - J Microbiol Exp VL - 5 ID - Doori2017 ER - TY - JOUR AU - Dixit, V. AU - Pant, A. PY - 2000 DA - 2000// TI - Comparative characterization of two serine endopeptidases from Nocardiopsis sp NCIM 5124 JO - Biochimica et Biophysica Acta (BBA) General Subjects. VL - 1523 UR - https://doi.org/10.1016/S0304-4165(00)00132-X DO - 10.1016/S0304-4165(00)00132-X ID - Dixit2000 ER - TY - JOUR AU - Scott, J. J. AU - Oh, D. -. C. AU - Yuceer, M. C. AU - Klepzig, K. D. AU - Clardy, J. AU - Currie, C. R. PY - 2008 DA - 2008// TI - Bacterial protection of beetle-fungus mutualism JO - Science VL - 322 UR - https://doi.org/10.1126/science.1160423 DO - 10.1126/science.1160423 ID - Scott2008 ER - TY - JOUR AU - Watanabe, Y. AU - Shinzato, N. AU - Fukatsu, T. PY - 2003 DA - 2003// TI - Isolation of actinomycetes from termites' guts JO - Biosci Biotechnol Biochem VL - 67 UR - https://doi.org/10.1271/bbb.67.1797 DO - 10.1271/bbb.67.1797 ID - Watanabe2003 ER - TY - JOUR AU - Vasanthakumar, A. AU - Handelsman, J. AU - Schloss, P. D. AU - Bauer, L. S. AU - Raffa, K. F. PY - 2008 DA - 2008// TI - Gut microbiota of an invasive subcortical beetle, Agrilus planipennis Fairmaire, across various life stages JO - Environ Entomol VL - 37 UR - https://doi.org/10.1093/ee/37.5.1344 DO - 10.1093/ee/37.5.1344 ID - Vasanthakumar2008 ER - TY - JOUR AU - Lewin, G. R. AU - Carlos, C. AU - Chevrette, M. G. AU - Horn, H. A. AU - McDonald, B. R. AU - Stankey, R. J. AU - Fox, B. G. AU - Currie, C. R. PY - 2016 DA - 2016// TI - Evolution and ecology of Actinobacteria and their bioenergy applications JO - Annu Rev Microbiol VL - 70 UR - https://doi.org/10.1146/annurev-micro-102215-095748 DO - 10.1146/annurev-micro-102215-095748 ID - Lewin2016 ER - TY - STD TI - Mihajlovski K, Buntić A, Milić M, Rajilić-Stojanović M, Dimitrijević-Branković S: From Agricultural Waste to Biofuel: Enzymatic Potential of a Bacterial Isolate Streptomyces fulvissimus CKS7 for Bioethanol Production. Waste and Biomass Valorization 2020. pp. 1–10. ID - ref87 ER - TY - JOUR AU - Arneodo, J. D. AU - Etcheverry, C. AU - Thebe, T. AU - Babalola, O. O. AU - Godoy, M. C. AU - Talia, P. PY - 2018 DA - 2018// TI - Molecular evidence that cellulolytic bacterial genus Cohnella is widespread among Neotropical Nasutitermitinae from NE Argentina JO - Rev Argent Microbiol VL - 51 ID - Arneodo2018 ER - TY - STD TI - Arora STJMN, Mishra P: Microbial cellulolytic enzymes: diversity and biotechnology with reference to lignocellulosic biomass degradation. 2020. ID - ref89 ER - TY - JOUR AU - Han, Q. AU - Liu, N. AU - Robinson, H. AU - Cao, L. AU - Qian, C. AU - Wang, Q. AU - Xie, L. AU - Ding, H. AU - Wang, Q. AU - Huang, Y. PY - 2013 DA - 2013// TI - Biochemical characterization and crystal structure of a GH10 xylanase from termite gut bacteria reveal a novel structural feature and significance of its bacterial Ig-like domain JO - Biotechnol Bioeng VL - 110 UR - https://doi.org/10.1002/bit.24982 DO - 10.1002/bit.24982 ID - Han2013 ER - TY - STD TI - Talia P, Arneodo J. Lignocellulose degradation by termites. Termites and sustainable management. Springer; 2018. pp. 101–117. ID - ref91 ER - TY - JOUR AU - Abo, B. O. AU - Gao, M. AU - Wang, Y. AU - Wu, C. AU - Ma, H. AU - Wang, Q. PY - 2019 DA - 2019// TI - Lignocellulosic biomass for bioethanol: an overview on pretreatment, hydrolysis and fermentation processes JO - Rev Environ Health VL - 34 UR - https://doi.org/10.1515/reveh-2018-0054 DO - 10.1515/reveh-2018-0054 ID - Abo2019 ER - TY - STD TI - Arora R, Sharma NK, Kumar S, Sani RK. Lignocellulosic ethanol: feedstocks and bioprocessing. Bioethanol production from food crops. Elsevier; 2019. pp. 165–185. ID - ref93 ER - TY - STD TI - Brodeur G, Yau E, Badal K, Collier J, Ramachandran K, Ramakrishnan S. Chemical and physicochemical pretreatment of lignocellulosic biomass: a review. Enzyme Research. 2011. ID - ref94 ER - TY - STD TI - Harmsen P, Huijgen W, Bermudez L, Bakker R: Literature review of physical and chemical pretreatment processes for lignocellulosic biomass. Wageningen UR-Food & Biobased Research; 2010. ID - ref95 ER - TY - JOUR AU - Lu, X. AU - Zhang, Y. AU - Yang, J. AU - Liang, Y. PY - 2007 DA - 2007// TI - Enzymatic hydrolysis of corn stover after pretreatment with dilute sulfuric acid JO - Chem Eng Technol Industrial Chem Plant Equipment Process Eng Biotechnol VL - 30 ID - Lu2007 ER - TY - STD TI - Tran TTA, Le TKP, Mai TP, Nguyen DQ. Bioethanol production from lignocellulosic biomass. alcohol fuels-current technologies and future prospect. IntechOpen; 2019. ID - ref97 ER - TY - JOUR AU - Bhandari, N. AU - Macdonald, D. G. AU - Bakhshi, N. N. PY - 1984 DA - 1984// TI - Kinetic studies of corn stover saccharification using sulphuric acid JO - Biotechnol Bioeng VL - 26 UR - https://doi.org/10.1002/bit.260260405 DO - 10.1002/bit.260260405 ID - Bhandari1984 ER - TY - JOUR AU - Cara, C. AU - Ruiz, E. AU - Oliva, J. M. AU - Sáez, F. AU - Castro, E. PY - 2007 DA - 2007// TI - Conversion of olive tree biomass into fermentable sugars by dilute acid pretreatment and enzymatic saccharification JO - Biores Technol VL - 99 UR - https://doi.org/10.1016/j.biortech.2007.03.037 DO - 10.1016/j.biortech.2007.03.037 ID - Cara2007 ER - TY - JOUR AU - Silverstein, R. A. AU - Chen, Y. AU - Sharma-Shivappa, R. R. AU - Boyette, M. D. AU - Osborne, J. PY - 2007 DA - 2007// TI - A comparison of chemical pretreatment methods for improving saccharification of cotton stalks JO - Biores Technol VL - 98 UR - https://doi.org/10.1016/j.biortech.2006.10.022 DO - 10.1016/j.biortech.2006.10.022 ID - Silverstein2007 ER - TY - JOUR AU - Mosier, N. AU - Hendrickson, R. AU - Ho, N. AU - Sedlak, M. AU - Ladisch, M. R. PY - 2005 DA - 2005// TI - Optimization of pH controlled liquid hot water pretreatment of corn stover JO - Biores Technol VL - 96 UR - https://doi.org/10.1016/j.biortech.2005.01.013 DO - 10.1016/j.biortech.2005.01.013 ID - Mosier2005 ER - TY - JOUR AU - Tsegaye, B. AU - Balomajumder, C. AU - Roy, P. PY - 2017 DA - 2017// TI - Alkali pretreatment of wheat straw followed by microbial hydrolysis for bioethanol production JO - Environ Technol VL - 40 UR - https://doi.org/10.1080/09593330.2017.1418911 DO - 10.1080/09593330.2017.1418911 ID - Tsegaye2017 ER - TY - STD TI - Balan V. Current challenges in commercially producing biofuels from lignocellulosic biomass. ISRN Biotechnology; 2014. Doi: https://doi.org/10.1155/2014/463074. ID - ref103 ER - TY - BOOK AU - Karimi, K. PY - 2015 DA - 2015// TI - Lignocellulose-based bioproducts PB - Springer CY - Germany UR - https://doi.org/10.1007/978-3-319-14033-9 DO - 10.1007/978-3-319-14033-9 ID - Karimi2015 ER - TY - JOUR AU - Taherzadeh, M. J. AU - Karimi, K. PY - 2007 DA - 2007// TI - Enzyme-based hydrolysis processes for ethanol from lignocellulosic materials: a review JO - BioResources VL - 2 ID - Taherzadeh2007 ER - TY - STD TI - Axelsson J. Separate hydrolysis and fermentation of pretreated spruce. 2011. ID - ref106 ER - TY - JOUR AU - Alfani, F. AU - Gallifuoco, A. AU - Saporosi, A. AU - Spera, A. AU - Cantarella, M. PY - 2000 DA - 2000// TI - Comparison of SHF and SSF processes for the bioconversion of steam-exploded wheat straw JO - J Ind Microbiol Biotechnol VL - 25 UR - https://doi.org/10.1038/sj.jim.7000054 DO - 10.1038/sj.jim.7000054 ID - Alfani2000 ER - TY - JOUR AU - Zabed, H. AU - Sahu, J. AU - Boyce, A. AU - Faruq, G. PY - 2016 DA - 2016// TI - Fuel ethanol production from lignocellulosic biomass: an overview on feedstocks and technological approaches JO - Renew Sustain Energy Rev VL - 66 UR - https://doi.org/10.1016/j.rser.2016.08.038 DO - 10.1016/j.rser.2016.08.038 ID - Zabed2016 ER - TY - STD TI - Althuri A, Chintagunta AD, Sherpa KC, Banerjee R. Simultaneous saccharification and fermentation of lignocellulosic biomass. Biorefining of Biomass to Biofuels. Springer; 2018; pp. 265–285. ID - ref109 ER - TY - STD TI - Liu F, Monroe E, Davis RW. Engineering microbial consortia for bioconversion of multisubstrate biomass streams to biofuels. Biofuels-Challenges and opportunities. IntechOpen; 2018. ID - ref110 ER - TY - STD TI - Levin DB, Verbeke TJ, Munir R, Islam R, Ramachandran U, Lal S, Schellenberg J, Sparling R. Omics approaches for designing biofuel producing cocultures for enhanced microbial conversion of lignocellulosic substrates. Direct microbial conversion of biomass to advanced biofuels. Elsevier; 2015; pp. 335–363. ID - ref111 ER - TY - STD TI - Fan Z: Consolidated bioprocessing for ethanol production. Biorefineries. Elsevier; 2014; pp. 141–160. ID - ref112 ER - TY - JOUR AU - Mbaneme-Smith, V. AU - Chinn, M. S. PY - 2015 DA - 2015// TI - Consolidated bioprocessing for biofuel production: recent advances JO - Energy Emission Control Technol VL - 3 ID - Mbaneme-Smith2015 ER - TY - JOUR AU - Schuster, B. G. AU - Chinn, M. S. PY - 2013 DA - 2013// TI - Consolidated bioprocessing of lignocellulosic feedstocks for ethanol fuel production JO - BioEnergy Res VL - 6 UR - https://doi.org/10.1007/s12155-012-9278-z DO - 10.1007/s12155-012-9278-z ID - Schuster2013 ER - TY - JOUR AU - Kim, S. AU - Baek, S. -. H. AU - Lee, K. AU - Hahn, J. -. S. PY - 2013 DA - 2013// TI - Cellulosic ethanol production using a yeast consortium displaying a minicellulosome and β-glucosidase JO - Microb Cell Fact VL - 12 UR - https://doi.org/10.1186/1475-2859-12-14 DO - 10.1186/1475-2859-12-14 ID - Kim2013 ER - TY - JOUR AU - Azman, S. AU - Khadem, A. F. AU - Lier, J. B. AU - Zeeman, G. AU - Plugge, C. M. PY - 2015 DA - 2015// TI - Presence and role of anaerobic hydrolytic microbes in conversion of lignocellulosic biomass for biogas production JO - Crit Rev Environ Sci Technol VL - 45 UR - https://doi.org/10.1080/10643389.2015.1053727 DO - 10.1080/10643389.2015.1053727 ID - Azman2015 ER - TY - JOUR AU - Fockink, D. H. AU - Maceno, M. A. C. AU - Ramos, L. P. PY - 2015 DA - 2015// TI - Production of cellulosic ethanol from cotton processing residues after pretreatment with dilute sodium hydroxide and enzymatic hydrolysis JO - BioresourceTechnol VL - 187 UR - https://doi.org/10.1016/j.biortech.2015.03.096 DO - 10.1016/j.biortech.2015.03.096 ID - Fockink2015 ER - TY - JOUR AU - Behera, S. S. AU - Ray, R. C. PY - 2016 DA - 2016// TI - Solid state fermentation for production of microbial cellulases: Recent advances and improvement strategies JO - Int J Biol Macromol VL - 86 UR - https://doi.org/10.1016/j.ijbiomac.2015.10.090 DO - 10.1016/j.ijbiomac.2015.10.090 ID - Behera2016 ER - TY - JOUR AU - García-Aparicio, M. AU - Oliva, J. AU - Manzanares, P. AU - Ballesteros, M. AU - Ballesteros, I. AU - González, A. AU - Negro, M. PY - 2011 DA - 2011// TI - Second-generation ethanol production from steam exploded barley straw by Kluyveromyces marxianus CECT 10875 JO - Fuel VL - 90 UR - https://doi.org/10.1016/j.fuel.2010.10.052 DO - 10.1016/j.fuel.2010.10.052 ID - García-Aparicio2011 ER - TY - JOUR AU - Parisutham, V. AU - Kim, T. H. AU - Lee, S. K. PY - 2014 DA - 2014// TI - Feasibilities of consolidated bioprocessing microbes: from pretreatment to biofuel production JO - Biores Technol VL - 161 UR - https://doi.org/10.1016/j.biortech.2014.03.114 DO - 10.1016/j.biortech.2014.03.114 ID - Parisutham2014 ER - TY - JOUR AU - Kim, J. -. H. AU - Block, D. E. AU - Mills, D. A. PY - 2010 DA - 2010// TI - Simultaneous consumption of pentose and hexose sugars: an optimal microbial phenotype for efficient fermentation of lignocellulosic biomass JO - Appl Microbiol Biotechnol VL - 88 UR - https://doi.org/10.1007/s00253-010-2839-1 DO - 10.1007/s00253-010-2839-1 ID - Kim2010 ER - TY - JOUR AU - Canilha, L. AU - Chandel, A. K. PY - 2012 DA - 2012// TI - Bioconversion of sugarcane biomass into ethanol: an overview about composition, pretreatment methods, detoxification of hydrolysates, enzymatic saccharification, and ethanol fermentation JO - BioMed Res Int. UR - https://doi.org/10.1155/2012/989572 DO - 10.1155/2012/989572 ID - Canilha2012 ER - TY - JOUR AU - Martiniano, S. E. AU - Chandel, A. K. AU - Soares, L. C. AU - Pagnocca, F. C. AU - Silva, S. S. PY - 2013 DA - 2013// TI - Evaluation of novel xylose-fermenting yeast strains from Brazilian forests for hemicellulosic ethanol production from sugarcane bagasse JO - 3 Biotech VL - 3 UR - https://doi.org/10.1007/s13205-013-0145-1 DO - 10.1007/s13205-013-0145-1 ID - Martiniano2013 ER - TY - JOUR AU - Moysés, D. N. AU - Reis, V. C. B. AU - Almeida, J. R. M. D. AU - Moraes, L. M. P. D. AU - Torres, F. A. G. PY - 2016 DA - 2016// TI - Xylose fermentation by Saccharomyces cerevisiae: challenges and prospects JO - Int J Mol Sci VL - 17 UR - https://doi.org/10.3390/ijms17030207 DO - 10.3390/ijms17030207 ID - Moysés2016 ER - TY - JOUR AU - Chandel, A. K. AU - Singh, O. V. AU - Chandrasekhar, G. AU - Rao, L. V. AU - Narasu, M. L. PY - 2010 DA - 2010// TI - Key drivers influencing the commercialization of ethanol-based biorefineries JO - J Commercial Biotechnol VL - 16 UR - https://doi.org/10.1057/jcb.2010.5 DO - 10.1057/jcb.2010.5 ID - Chandel2010 ER - TY - JOUR AU - Senatham, S. AU - Chamduang, T. AU - Kaewchingduang, Y. AU - Thammasittirong, A. AU - Srisodsuk, M. AU - Elliston, A. AU - Roberts, I. N. AU - Waldron, K. W. PY - 2016 DA - 2016// TI - Thammasittirong SN-R: enhanced xylose fermentation and hydrolysate inhibitor tolerance of Scheffersomyces shehatae JO - SpringerPlus VL - 5 UR - https://doi.org/10.1186/s40064-016-2713-4 DO - 10.1186/s40064-016-2713-4 ID - Senatham2016 ER - TY - JOUR AU - Li, P. AU - Fu, X. AU - Zhang, L. AU - Li, S. PY - 2019 DA - 2019// TI - CRISPR/Cas-based screening of a gene activation library in Saccharomyces cerevisiae identifies a crucial role of OLE1 in thermotolerance JO - Microb Biotechnol VL - 12 UR - https://doi.org/10.1111/1751-7915.13333 DO - 10.1111/1751-7915.13333 ID - Li2019 ER - TY - JOUR AU - McMillan, J. D. AU - Beckham, G. T. PY - 2017 DA - 2017// TI - Thinking big: towards ideal strains and processes for large-scale aerobic biofuels production JO - Microb Biotechnol VL - 10 UR - https://doi.org/10.1111/1751-7915.12471 DO - 10.1111/1751-7915.12471 ID - McMillan2017 ER - TY - JOUR AU - Du, J. AU - Shao, Z. AU - Zhao, H. PY - 2011 DA - 2011// TI - Engineering microbial factories for synthesis of value-added products JO - J Ind Microbiol Biotechnol VL - 38 UR - https://doi.org/10.1007/s10295-011-0970-3 DO - 10.1007/s10295-011-0970-3 ID - Du2011 ER - TY - BOOK AU - Chua, P. AU - Somanchi, A. PY - 2016 DA - 2016// TI - Genetically engineered microorganisms that metabolize xylose PB - Google Patents CY - In. ID - Chua2016 ER - TY - JOUR AU - Milne, N. AU - Wahl, S. AU - Maris, A. AU - Pronk, J. AU - Daran, J. PY - 2016 DA - 2016// TI - Excessive by-product formation: a key contributor to low isobutanol yields of engineered Saccharomyces cerevisiae strains JO - Metabolic Eng Commun VL - 3 UR - https://doi.org/10.1016/j.meteno.2016.01.002 DO - 10.1016/j.meteno.2016.01.002 ID - Milne2016 ER - TY - JOUR AU - Romaní, A. AU - Pereira, F. AU - Johansson, B. AU - Domingues, L. PY - 2015 DA - 2015// TI - Metabolic engineering of Saccharomyces cerevisiae ethanol strains PE-2 and CAT-1 for efficient lignocellulosic fermentation JO - Biores Technol VL - 179 UR - https://doi.org/10.1016/j.biortech.2014.12.020 DO - 10.1016/j.biortech.2014.12.020 ID - Romaní2015 ER - TY - JOUR AU - Pasotti, L. AU - Zucca, S. AU - Casanova, M. AU - Micoli, G. AU - Angelis, M. G. C. AU - Magni, P. PY - 2017 DA - 2017// TI - Fermentation of lactose to ethanol in cheese whey permeate and concentrated permeate by engineered Escherichia coli JO - BMC Biotechnol VL - 17 UR - https://doi.org/10.1186/s12896-017-0369-y DO - 10.1186/s12896-017-0369-y ID - Pasotti2017 ER - TY - JOUR AU - Mendez-Perez, D. AU - Alonso-Gutierrez, J. AU - Hu, Q. AU - Molinas, M. AU - Baidoo, E. E. AU - Wang, G. AU - Chan, L. J. AU - Adams, P. D. AU - Petzold, C. J. AU - Keasling, J. D. PY - 2017 DA - 2017// TI - Production of jet fuel precursor monoterpenoids from engineered Escherichia coli JO - Biotechnol Bioeng VL - 114 UR - https://doi.org/10.1002/bit.26296 DO - 10.1002/bit.26296 ID - Mendez-Perez2017 ER - TY - JOUR AU - Jessop-Fabre, M. M. AU - Jakočiūnas, T. AU - Stovicek, V. AU - Dai, Z. AU - Jensen, M. K. AU - Keasling, J. D. AU - Borodina, I. PY - 2016 DA - 2016// TI - EasyClone-MarkerFree: a vector toolkit for marker-less integration of genes into Saccharomyces cerevisiae via CRISPR-Cas9 JO - Biotechnol J VL - 11 UR - https://doi.org/10.1002/biot.201600147 DO - 10.1002/biot.201600147 ID - Jessop-Fabre2016 ER - TY - JOUR AU - Parisutham, V. AU - Sathesh-Prabu, C. AU - Mukhopadhyay, A. AU - Lee, S. K. AU - Keasling, J. D. PY - 2017 DA - 2017// TI - Intracellular cellobiose metabolism and its applications in lignocellulose-based biorefineries JO - Bioresource Technol VL - 239 UR - https://doi.org/10.1016/j.biortech.2017.05.001 DO - 10.1016/j.biortech.2017.05.001 ID - Parisutham2017 ER - TY - JOUR AU - Sievert, C. AU - Nieves, L. M. AU - Panyon, L. A. AU - Loeffler, T. AU - Morris, C. AU - Cartwright, R. A. AU - Wang, X. PY - 2017 DA - 2017// TI - Experimental evolution reveals an effective avenue to release catabolite repression via mutations in XylR JO - Proc Natl Acad Sci VL - 114 UR - https://doi.org/10.1073/pnas.1700345114 DO - 10.1073/pnas.1700345114 ID - Sievert2017 ER - TY - JOUR AU - Flores, A. D. AU - Ayla, E. Z. AU - Nielsen, D. R. AU - Wang, X. PY - 2019 DA - 2019// TI - Engineering a synthetic, catabolically orthogonal coculture system for enhanced conversion of lignocellulose-derived sugars to ethanol JO - ACS Synthetic Biol VL - 8 UR - https://doi.org/10.1021/acssynbio.9b00007 DO - 10.1021/acssynbio.9b00007 ID - Flores2019 ER - TY - JOUR AU - Bilal, M. AU - Iqbal, H. M. AU - Hu, H. AU - Wang, W. AU - Zhang, X. PY - 2018 DA - 2018// TI - Metabolic engineering and enzyme-mediated processing: a biotechnological venture towards biofuel production–a review JO - Renew Sustain Energy Rev VL - 82 UR - https://doi.org/10.1016/j.rser.2017.09.070 DO - 10.1016/j.rser.2017.09.070 ID - Bilal2018 ER - TY - JOUR AU - Ling, H. AU - Teo, W. AU - Chen, B. AU - Leong, S. S. J. AU - Chang, M. W. PY - 2014 DA - 2014// TI - Microbial tolerance engineering toward biochemical production: from lignocellulose to products JO - Curr Opin Biotechnol VL - 29 UR - https://doi.org/10.1016/j.copbio.2014.03.005 DO - 10.1016/j.copbio.2014.03.005 ID - Ling2014 ER - TY - JOUR AU - Mukhopadhyay, A. PY - 2015 DA - 2015// TI - Tolerance engineering in bacteria for the production of advanced biofuels and chemicals JO - Trends Microbiol VL - 23 UR - https://doi.org/10.1016/j.tim.2015.04.008 DO - 10.1016/j.tim.2015.04.008 ID - Mukhopadhyay2015 ER - TY - JOUR AU - Kim, S. R. AU - Skerker, J. M. AU - Kang, W. AU - Lesmana, A. AU - Wei, N. AU - Arkin, A. P. AU - Jin, Y. -. S. PY - 2013 DA - 2013// TI - Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0057048 DO - 10.1371/journal.pone.0057048 ID - Kim2013 ER - TY - JOUR AU - Alper, H. AU - Moxley, J. AU - Nevoigt, E. AU - Fink, G. R. AU - Stephanopoulos, G. PY - 2006 DA - 2006// TI - Engineering yeast transcription machinery for improved ethanol tolerance and production JO - Science VL - 314 UR - https://doi.org/10.1126/science.1131969 DO - 10.1126/science.1131969 ID - Alper2006 ER - TY - JOUR AU - Atsumi, S. AU - Hanai, T. AU - Liao, J. C. PY - 2008 DA - 2008// TI - Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels JO - Nature VL - 451 UR - https://doi.org/10.1038/nature06450 DO - 10.1038/nature06450 ID - Atsumi2008 ER - TY - JOUR AU - El-Rotail, A. A. AU - Zhang, L. AU - Li, Y. AU - Liu, S. P. AU - Shi, G. Y. PY - 2017 DA - 2017// TI - A novel constructed SPT15 mutagenesis library of Saccharomyces cerevisiae by using gTME technique for enhanced ethanol production JO - AMB Express VL - 7 UR - https://doi.org/10.1186/s13568-017-0400-7 DO - 10.1186/s13568-017-0400-7 ID - El-Rotail2017 ER - TY - STD TI - Xu P: Production of chemicals using dynamic control of metabolic fluxes. 2017. ID - ref146 ER - TY - JOUR AU - Hollinshead, W. AU - He, L. AU - Tang, Y. J. PY - 2014 DA - 2014// TI - Biofuel production: an odyssey from metabolic engineering to fermentation scale-up JO - Front Microbiol UR - https://doi.org/10.3389/fmicb.2014.00344 DO - 10.3389/fmicb.2014.00344 ID - Hollinshead2014 ER - TY - JOUR AU - Majidian, P. AU - Tabatabaei, M. AU - Zeinolabedini, M. AU - Naghshbandi, M. P. AU - Chisti, Y. PY - 2017 DA - 2017// TI - Metabolic engineering of microorganisms for biofuel production JO - Renew Sustain Energy Rev VL - 82 UR - https://doi.org/10.1016/j.rser.2017.10.085 DO - 10.1016/j.rser.2017.10.085 ID - Majidian2017 ER - TY - JOUR AU - Bashor, C. J. AU - Horwitz, A. A. AU - Peisajovich, S. G. AU - Lim, W. A. PY - 2010 DA - 2010// TI - Rewiring cells: synthetic biology as a tool to interrogate the organizational principles of living systems JO - Ann Rev Biophysics VL - 39 UR - https://doi.org/10.1146/annurev.biophys.050708.133652 DO - 10.1146/annurev.biophys.050708.133652 ID - Bashor2010 ER - TY - JOUR AU - Seshasayee, A. S. AU - Fraser, G. M. AU - Babu, M. M. AU - Luscombe, N. M. PY - 2009 DA - 2009// TI - Principles of transcriptional regulation and evolution of the metabolic system in E. coli JO - Genome Res. VL - 19 UR - https://doi.org/10.1101/gr.079715.108 DO - 10.1101/gr.079715.108 ID - Seshasayee2009 ER - TY - STD TI - Lv Y, Qian S, Du G, Chen J, Zhou J, Xu P. Coupling feedback genetic circuits with growth phenotype for dynamic population control and intelligent bioproduction. UMBC Faculty Collection. 2019. ID - ref151 ER - TY - JOUR AU - Xu, P. AU - Li, L. AU - Zhang, F. AU - Stephanopoulos, G. AU - Koffas, M. PY - 2014 DA - 2014// TI - Improving fatty acids production by engineering dynamic pathway regulation and metabolic control JO - Proc Natl Acad Sci VL - 111 UR - https://doi.org/10.1073/pnas.1406401111 DO - 10.1073/pnas.1406401111 ID - Xu2014 ER - TY - JOUR AU - Nielsen, J. PY - 2003 DA - 2003// TI - It is all about metabolic fluxes JO - J Bacteriol. VL - 185 UR - https://doi.org/10.1128/JB.185.24.7031-7035.2003 DO - 10.1128/JB.185.24.7031-7035.2003 ID - Nielsen2003 ER - TY - JOUR AU - Lynd, L. R. AU - Weimer, P. J. AU - Zyl, W. H. AU - Pretorius, I. S. PY - 2002 DA - 2002// TI - Microbial cellulose utilization: fundamentals and biotechnology JO - Microbiol Mol Biol Rev VL - 66 UR - https://doi.org/10.1128/MMBR.66.3.506-577.2002 DO - 10.1128/MMBR.66.3.506-577.2002 ID - Lynd2002 ER - TY - JOUR AU - Avanthi, A. AU - Banerjee, R. PY - 2016 DA - 2016// TI - A strategic laccase mediated lignin degradation of lignocellulosic feedstocks for ethanol production JO - Ind Crops Prod VL - 92 UR - https://doi.org/10.1016/j.indcrop.2016.08.009 DO - 10.1016/j.indcrop.2016.08.009 ID - Avanthi2016 ER - TY - JOUR AU - Menon, V. AU - Rao, M. PY - 2012 DA - 2012// TI - Trends in bioconversion of lignocellulose: biofuels, platform chemicals & biorefinery concept JO - Prog Energy Combust Sci VL - 38 UR - https://doi.org/10.1016/j.pecs.2012.02.002 DO - 10.1016/j.pecs.2012.02.002 ID - Menon2012 ER - TY - JOUR AU - Lynd, L. R. AU - Laser, M. S. AU - Bransby, D. AU - Dale, B. E. AU - Davison, B. AU - Hamilton, R. AU - Himmel, M. AU - Keller, M. AU - McMillan, J. D. AU - Sheehan, J. PY - 2008 DA - 2008// TI - How biotech can transform biofuels JO - Nat Biotechnol VL - 26 UR - https://doi.org/10.1038/nbt0208-169 DO - 10.1038/nbt0208-169 ID - Lynd2008 ER - TY - JOUR AU - Adrio, J. L. AU - Demain, A. L. PY - 2014 DA - 2014// TI - Microbial enzymes: tools for biotechnological processes JO - In VL - 4 ID - Adrio2014 ER - TY - JOUR AU - Ravindran, R. AU - Jaiswal, A. PY - 2016 DA - 2016// TI - Microbial enzyme production using lignocellulosic food industry wastes as feedstock: a review JO - Bioengineering VL - 3 UR - https://doi.org/10.3390/bioengineering3040030 DO - 10.3390/bioengineering3040030 ID - Ravindran2016 ER - TY - JOUR AU - Warnecke, F. AU - Luginbühl, P. AU - Ivanova, N. AU - Ghassemian, M. AU - Richardson, T. H. AU - Stege, J. T. AU - Cayouette, M. AU - McHardy, A. C. AU - Djordjevic, G. AU - Aboushadi, N. PY - 2007 DA - 2007// TI - Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite JO - Nature VL - 450 UR - https://doi.org/10.1038/nature06269 DO - 10.1038/nature06269 ID - Warnecke2007 ER - TY - JOUR AU - Batista-García, R. A. AU - Rayo, S. -. C. AU - Talia, P. AU - Jackson, S. A. AU - O'Leary, N. D. AU - Dobson, A. D. AU - Folch-Mallol, J. L. PY - 2016 DA - 2016// TI - From lignocellulosic metagenomes to lignocellulolytic genes: trends, challenges and future prospects JO - Biofuels Bioprod Biorefin VL - 10 UR - https://doi.org/10.1002/bbb.1709 DO - 10.1002/bbb.1709 ID - Batista-García2016 ER - TY - BOOK AU - Bibra, M. AU - Wang, J. AU - Squillace, P. AU - Pinkelman, R. AU - Papendick, S. AU - Schneiderman, S. AU - Wood, V. AU - Amar, V. AU - Kumar, S. AU - Salem D: Biofuels and value-added products from extremophiles. PY - 2015 DA - 2015// TI - In book: advances in biotechnology, Chapter: 2 PB - I.K. International Publishing House New Delhi CY - Publisher ID - Bibra2015 ER - TY - JOUR AU - Pandey, S. PY - 2015 DA - 2015// TI - Cellulases in conversion of lignocellulosic waste into second-generation biofuel JO - Int J Adv Res VL - 3 ID - Pandey2015 ER - TY - JOUR AU - Saini, J. K. AU - Saini, R. AU - Tewari, L. PY - 2015 DA - 2015// TI - Lignocellulosic agriculture wastes as biomass feedstocks for second-generation bioethanol production: concepts and recent developments JO - 3 Biotech VL - 5 UR - https://doi.org/10.1007/s13205-014-0246-5 DO - 10.1007/s13205-014-0246-5 ID - Saini2015 ER - TY - STD TI - Avanthi A, Kumar S, Sherpa KC, Banerjee R. Bioconversion of hemicelluloses of lignocellulosic biomass to ethanol: an attempt to utilize pentose sugars. Biofuels. 2016; pp. 1–14. ID - ref165 ER - TY - JOUR AU - Kang, A. AU - Lee, T. S. PY - 2015 DA - 2015// TI - Converting sugars to biofuels: ethanol and beyond JO - Bioengineering VL - 2 UR - https://doi.org/10.3390/bioengineering2040184 DO - 10.3390/bioengineering2040184 ID - Kang2015 ER - TY - JOUR AU - Phelan, R. M. AU - Sekurova, O. N. AU - Keasling, J. D. AU - Zotchev, S. B. PY - 2014 DA - 2014// TI - Engineering terpene biosynthesis in Streptomyces for production of the advanced biofuel precursor bisabolene JO - ACS Synthetic Biol VL - 4 UR - https://doi.org/10.1021/sb5002517 DO - 10.1021/sb5002517 ID - Phelan2014 ER - TY - JOUR AU - Jullesson, D. AU - David, F. AU - Pfleger, B. AU - Nielsen, J. PY - 2015 DA - 2015// TI - Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals JO - Biotechnol Adv VL - 33 UR - https://doi.org/10.1016/j.biotechadv.2015.02.011 DO - 10.1016/j.biotechadv.2015.02.011 ID - Jullesson2015 ER - TY - JOUR AU - Kern, A. AU - Tilley, E. AU - Hunter, I. S. AU - Legiša, M. AU - Glieder, A. PY - 2007 DA - 2007// TI - Engineering primary metabolic pathways of industrial micro-organisms JO - J Biotechnol VL - 129 UR - https://doi.org/10.1016/j.jbiotec.2006.11.021 DO - 10.1016/j.jbiotec.2006.11.021 ID - Kern2007 ER - TY - JOUR AU - Singh, V. AU - Mani, I. AU - Chaudhary, D. K. AU - Dhar, P. K. PY - 2014 DA - 2014// TI - Metabolic engineering of biosynthetic pathway for production of renewable biofuels JO - Appl Biochem Biotechnol VL - 172 UR - https://doi.org/10.1007/s12010-013-0606-3 DO - 10.1007/s12010-013-0606-3 ID - Singh2014 ER - TY - JOUR AU - Papoutsakis, E. T. PY - 2015 DA - 2015// TI - Reassessing the progress in the production of advanced biofuels in the current competitive environment and beyond: what are the successes and where progress eludes us and why JO - Ind Eng Chem Res VL - 54 UR - https://doi.org/10.1021/acs.iecr.5b01695 DO - 10.1021/acs.iecr.5b01695 ID - Papoutsakis2015 ER - TY - JOUR AU - Rabinovitch-Deere, C. A. AU - Oliver, J. W. AU - Rodriguez, G. M. AU - Atsumi, S. PY - 2013 DA - 2013// TI - Synthetic biology and metabolic engineering approaches to produce biofuels JO - Chem Rev VL - 113 UR - https://doi.org/10.1021/cr300361t DO - 10.1021/cr300361t ID - Rabinovitch-Deere2013 ER - TY - JOUR AU - Cho, C. AU - Choi, S. Y. AU - Luo, Z. W. AU - Lee, S. Y. PY - 2015 DA - 2015// TI - Recent advances in microbial production of fuels and chemicals using tools and strategies of systems metabolic engineering JO - Biotechnol Adv VL - 33 UR - https://doi.org/10.1016/j.biotechadv.2014.11.006 DO - 10.1016/j.biotechadv.2014.11.006 ID - Cho2015 ER - TY - JOUR AU - Zhao, X. AU - Xiong, L. AU - Zhang, M. AU - Bai, F. PY - 2016 DA - 2016// TI - Towards efficient bioethanol production from agricultural and forestry residues: exploration of unique natural microorganisms in combination with advanced strain engineering JO - BioresourceTechnol VL - 215 UR - https://doi.org/10.1016/j.biortech.2016.03.158 DO - 10.1016/j.biortech.2016.03.158 ID - Zhao2016 ER - TY - JOUR AU - Chen, Y. AU - Nielsen, J. PY - 2016 DA - 2016// TI - Biobased organic acids production by metabolically engineered microorganisms JO - Curr Opin Biotechnol VL - 37 UR - https://doi.org/10.1016/j.copbio.2015.11.004 DO - 10.1016/j.copbio.2015.11.004 ID - Chen2016 ER - TY - JOUR AU - Park, Y. -. C. AU - Oh, E. J. AU - Jo, J. -. H. AU - Jin, Y. -. S. AU - Seo, J. -. H. PY - 2016 DA - 2016// TI - Recent advances in biological production of sugar alcohols JO - Curr Opin Biotechnol VL - 37 UR - https://doi.org/10.1016/j.copbio.2015.11.006 DO - 10.1016/j.copbio.2015.11.006 ID - Park2016 ER - TY - JOUR AU - Dornau, A. AU - Robson, J. F. AU - Thomas, G. H. AU - McQueen-Mason, S. J. PY - 2020 DA - 2020// TI - Robust microorganisms for biofuel and chemical production from municipal solid waste JO - Microb Cell Fact VL - 19 UR - https://doi.org/10.1186/s12934-020-01325-0 DO - 10.1186/s12934-020-01325-0 ID - Dornau2020 ER - TY - JOUR AU - Boock, J. T. AU - Freedman, A. J. AU - Tompsett, G. A. AU - Muse, S. K. AU - Allen, A. J. AU - Jackson, L. A. AU - Castro-Dominguez, B. AU - Timko, M. T. AU - Prather, K. L. AU - Thompson, J. R. PY - 2019 DA - 2019// TI - Engineered microbial biofuel production and recovery under supercritical carbon dioxide JO - Nat Commun VL - 10 UR - https://doi.org/10.1038/s41467-019-08486-6 DO - 10.1038/s41467-019-08486-6 ID - Boock2019 ER - TY - JOUR AU - Bhowmick, G. AU - Koduru, L. AU - Sen, R. PY - 2015 DA - 2015// TI - Metabolic pathway engineering towards enhancing microalgal lipid biosynthesis for biofuel application—a review JO - Renew Sustain Energy Rev VL - 50 UR - https://doi.org/10.1016/j.rser.2015.04.131 DO - 10.1016/j.rser.2015.04.131 ID - Bhowmick2015 ER - TY - JOUR AU - Ullah, M. W. AU - Khattak, W. A. AU - Ul-Islam, M. AU - Khan, S. AU - Park, J. K. PY - 2016 DA - 2016// TI - Metabolic engineering of synthetic cell-free systems: strategies and applications JO - Biochem Eng J VL - 105 UR - https://doi.org/10.1016/j.bej.2015.10.023 DO - 10.1016/j.bej.2015.10.023 ID - Ullah2016 ER - TY - JOUR AU - Runguphan, W. AU - Keasling, J. D. PY - 2014 DA - 2014// TI - Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals JO - Metab Eng VL - 21 UR - https://doi.org/10.1016/j.ymben.2013.07.003 DO - 10.1016/j.ymben.2013.07.003 ID - Runguphan2014 ER - TY - JOUR AU - Way Jeffrey, C. AU - Collins James, J. AU - Keasling Jay, D. AU - Silver Pamela, A. PY - 2014 DA - 2014// TI - Integrating biological redesign: where synthetic biology came from and where it needs to go JO - Cell VL - 157 UR - https://doi.org/10.1016/j.cell.2014.02.039 DO - 10.1016/j.cell.2014.02.039 ID - Way Jeffrey2014 ER - TY - JOUR AU - Liao, J. C. AU - Mi, L. AU - Pontrelli, S. AU - Luo, S. PY - 2016 DA - 2016// TI - Fuelling the future: microbial engineering for the production of sustainable biofuels JO - Nat Rev Microbiol VL - 14 UR - https://doi.org/10.1038/nrmicro.2016.32 DO - 10.1038/nrmicro.2016.32 ID - Liao2016 ER - TY - JOUR AU - Lo, J. AU - Olson, D. G. AU - Murphy, S. J. L. AU - Tian, L. AU - Hon, S. AU - Lanahan, A. AU - Guss, A. M. AU - Lynd, L. R. PY - 2017 DA - 2017// TI - Engineering electron metabolism to increase ethanol production in Clostridium thermocellum JO - Metab Eng VL - 39 UR - https://doi.org/10.1016/j.ymben.2016.10.018 DO - 10.1016/j.ymben.2016.10.018 ID - Lo2017 ER - TY - JOUR AU - Chen, Z. AU - Huang, J. AU - Wu, Y. AU - Wu, W. AU - Zhang, Y. AU - Liu, D. PY - 2017 DA - 2017// TI - Metabolic engineering of Corynebacterium glutamicum for the production of 3-hydroxypropionic acid from glucose and xylose JO - Metab Eng VL - 39 UR - https://doi.org/10.1016/j.ymben.2016.11.009 DO - 10.1016/j.ymben.2016.11.009 ID - Chen2017 ER - TY - JOUR AU - Liew, F. AU - Henstra, A. M. AU - Kӧpke, M. AU - Winzer, K. AU - Simpson, S. D. AU - Minton, N. P. PY - 2017 DA - 2017// TI - Metabolic engineering of Clostridium autoethanogenum for selective alcohol production JO - Metab Eng VL - 40 UR - https://doi.org/10.1016/j.ymben.2017.01.007 DO - 10.1016/j.ymben.2017.01.007 ID - Liew2017 ER - TY - JOUR AU - Varman, A. M. AU - Xiao, Y. AU - Pakrasi, H. B. AU - Tang, Y. J. PY - 2013 DA - 2013// TI - Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production JO - Appl Environ Microbiol VL - 79 UR - https://doi.org/10.1128/AEM.02827-12 DO - 10.1128/AEM.02827-12 ID - Varman2013 ER - TY - JOUR AU - Hirokawa, Y. AU - Maki, Y. AU - Hanai, T. PY - 2017 DA - 2017// TI - Improvement of 1,3-propanediol production using an engineered cyanobacterium, Synechococcus elongatus by optimization of the gene expression level of a synthetic metabolic pathway and production conditions JO - Metab Eng VL - 39 UR - https://doi.org/10.1016/j.ymben.2016.12.001 DO - 10.1016/j.ymben.2016.12.001 ID - Hirokawa2017 ER - TY - JOUR AU - Liu, R. AU - Zhu, F. AU - Lu, L. AU - Fu, A. AU - Lu, J. AU - Deng, Z. AU - Liu, T. PY - 2014 DA - 2014// TI - Metabolic engineering of fatty acyl-ACP reductase-dependent pathway to improve fatty alcohol production in Escherichia coli JO - Metab Eng VL - 22 UR - https://doi.org/10.1016/j.ymben.2013.12.004 DO - 10.1016/j.ymben.2013.12.004 ID - Liu2014 ER - TY - JOUR AU - Lian, J. AU - Chao, R. AU - Zhao, H. PY - 2014 DA - 2014// TI - Metabolic engineering of a Saccharomyces cerevisiae strain capable of simultaneously utilizing glucose and galactose to produce enantiopure (2R,3R)-butanediol JO - Metab Eng VL - 23 UR - https://doi.org/10.1016/j.ymben.2014.02.003 DO - 10.1016/j.ymben.2014.02.003 ID - Lian2014 ER - TY - JOUR AU - Chen, Z. AU - Wu, Y. AU - Huang, J. AU - Liu, D. PY - 2015 DA - 2015// TI - Metabolic engineering of Klebsiella pneumoniae for the de novo production of 2-butanol as a potential biofuel JO - Biores Technol VL - 197 UR - https://doi.org/10.1016/j.biortech.2015.08.086 DO - 10.1016/j.biortech.2015.08.086 ID - Chen2015 ER - TY - JOUR AU - Li, L. AU - Li, K. AU - Wang, Y. AU - Chen, C. AU - Xu, Y. AU - Zhang, L. AU - Han, B. AU - Gao, C. AU - Tao, F. AU - Ma, C. PY - 2015 DA - 2015// TI - Metabolic engineering of Enterobacter cloacae for high-yield production of enantiopure (2R, 3R)-2, 3-butanediol from lignocellulose-derived sugars JO - Metab Eng VL - 28 UR - https://doi.org/10.1016/j.ymben.2014.11.010 DO - 10.1016/j.ymben.2014.11.010 ID - Li2015 ER - TY - JOUR AU - Hu, B. AU - Lidstrom, M. E. PY - 2014 DA - 2014// TI - Metabolic engineering of Methylobacterium extorquens AM1 for 1-butanol production JO - Biotechnol Biofuels VL - 7 UR - https://doi.org/10.1186/s13068-014-0156-0 DO - 10.1186/s13068-014-0156-0 ID - Hu2014 ER - TY - JOUR AU - Yang, X. AU - Xu, M. AU - Yang, S. -. T. PY - 2015 DA - 2015// TI - Metabolic and process engineering of Clostridium cellulovorans for biofuel production from cellulose JO - Metab Eng VL - 32 UR - https://doi.org/10.1016/j.ymben.2015.09.001 DO - 10.1016/j.ymben.2015.09.001 ID - Yang2015 ER - TY - JOUR AU - Cha, M. AU - Chung, D. AU - Elkins, J. G. AU - Guss, A. M. AU - Westpheling, J. PY - 2013 DA - 2013// TI - Metabolic engineering of Caldicellulosiruptor bescii yields increased hydrogen production from lignocellulosic biomass JO - Biotechnol Biofuels VL - 6 UR - https://doi.org/10.1186/1754-6834-6-85 DO - 10.1186/1754-6834-6-85 ID - Cha2013 ER - TY - JOUR AU - Avalos, J. L. AU - Fink, G. R. AU - Stephanopoulos, G. PY - 2013 DA - 2013// TI - Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols JO - Nat Biotechnol VL - 31 UR - https://doi.org/10.1038/nbt.2509 DO - 10.1038/nbt.2509 ID - Avalos2013 ER - TY - JOUR AU - Schadeweg, V. AU - Boles, E. PY - 2016 DA - 2016// TI - Increasing n-butanol production with Saccharomyces cerevisiae by optimizing acetyl-CoA synthesis, NADH levels and trans-2-enoyl-CoA reductase expression JO - Biotechnol Biofuels VL - 9 UR - https://doi.org/10.1186/s13068-016-0673-0 DO - 10.1186/s13068-016-0673-0 ID - Schadeweg2016 ER - TY - JOUR AU - Ko, J. K. AU - Enkh-Amgalan, T. AU - Gong, G. AU - Um, Y. AU - Lee, S. M. PY - 2020 DA - 2020// TI - Improved bioconversion of lignocellulosic biomass by Saccharomyces cerevisiae engineered for tolerance to acetic acid JO - GCB Bioenergy VL - 12 UR - https://doi.org/10.1111/gcbb.12656 DO - 10.1111/gcbb.12656 ID - Ko2020 ER - TY - JOUR AU - Yu, L. AU - Xu, M. AU - Tang, I. C. AU - Yang, S. T. PY - 2015 DA - 2015// TI - Metabolic engineering of Clostridium tyrobutyricum for n-butanol production through co-utilization of glucose and xylose JO - Biotechnol Bioeng VL - 112 UR - https://doi.org/10.1002/bit.25613 DO - 10.1002/bit.25613 ID - Yu2015 ER - TY - JOUR AU - Luo, H. AU - Zeng, Q. AU - Han, S. AU - Wang, Z. AU - Dong, Q. AU - Bi, Y. AU - Zhao, Y. PY - 2017 DA - 2017// TI - High-efficient n-butanol production by co-culturing Clostridium acetobutylicum and Saccharomyces cerevisiae integrated with butyrate fermentative supernatant addition JO - World J Microbiol Biotechnol VL - 33 UR - https://doi.org/10.1007/s11274-017-2246-1 DO - 10.1007/s11274-017-2246-1 ID - Luo2017 ER - TY - JOUR AU - Das, M. AU - Patra, P. AU - Ghosh, A. PY - 2020 DA - 2020// TI - Metabolic engineering for enhancing microbial biosynthesis of advanced biofuels JO - Renew Sustain Energy Rev VL - 119 UR - https://doi.org/10.1016/j.rser.2019.109562 DO - 10.1016/j.rser.2019.109562 ID - Das2020 ER - TY - JOUR AU - Argyros, D. A. AU - Tripathi, S. A. AU - Barrett, T. F. AU - Rogers, S. R. AU - Feinberg, L. F. AU - Olson, D. G. AU - Foden, J. M. AU - Miller, B. B. AU - Lynd, L. R. AU - Hogsett, D. A. PY - 2011 DA - 2011// TI - High ethanol titers from cellulose by using metabolically engineered thermophilic, anaerobic microbes JO - Appl Environ Microbiol VL - 77 UR - https://doi.org/10.1128/AEM.00646-11 DO - 10.1128/AEM.00646-11 ID - Argyros2011 ER - TY - JOUR AU - Zhang, M. AU - Eddy, C. AU - Deanda, K. AU - Finkelstein, M. AU - Picataggio, S. PY - 1995 DA - 1995// TI - Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis JO - Science VL - 267 UR - https://doi.org/10.1126/science.267.5195.240 DO - 10.1126/science.267.5195.240 ID - Zhang1995 ER - TY - JOUR AU - Majidian, P. AU - Tabatabaei, M. AU - Zeinolabedini, M. AU - Naghshbandi, M. P. AU - Chisti, Y. PY - 2018 DA - 2018// TI - Metabolic engineering of microorganisms for biofuel production JO - Renew Sustain Energy Rev VL - 82 UR - https://doi.org/10.1016/j.rser.2017.10.085 DO - 10.1016/j.rser.2017.10.085 ID - Majidian2018 ER - TY - JOUR AU - Wang, H. AU - Cao, S. AU - Wang, W. T. AU - Wang, K. T. AU - Jia, X. PY - 2016 DA - 2016// TI - Very high gravity ethanol and fatty acid production of Zymomonas mobilis without amino acid and vitamin JO - J Ind Microbiol Biotechnol VL - 43 UR - https://doi.org/10.1007/s10295-016-1761-7 DO - 10.1007/s10295-016-1761-7 ID - Wang2016 ER - TY - JOUR AU - Romero, S. AU - Merino, E. AU - Bolívar, F. AU - Gosset, G. AU - Martinez, A. PY - 2007 DA - 2007// TI - Metabolic engineering of Bacillus subtilis for ethanol production: lactate dehydrogenase plays a key role in fermentative metabolism JO - Appl Environ Microbiol VL - 73 UR - https://doi.org/10.1128/AEM.00625-07 DO - 10.1128/AEM.00625-07 ID - Romero2007 ER - TY - JOUR AU - Tamaru, Y. AU - Miyake, H. AU - Kuroda, K. AU - Nakanishi, A. AU - Matsushima, C. AU - Doi, R. H. AU - Ueda, M. PY - 2011 DA - 2011// TI - Comparison of the mesophilic cellulosome-producing Clostridium cellulovorans genome with other cellulosome-related clostridial genomes JO - Microb Biotechnol VL - 4 UR - https://doi.org/10.1111/j.1751-7915.2010.00210.x DO - 10.1111/j.1751-7915.2010.00210.x ID - Tamaru2011 ER - TY - JOUR AU - Bao, T. AU - Zhao, J. AU - Li, J. AU - Liu, X. AU - Yang, S. -. T. PY - 2019 DA - 2019// TI - n-Butanol and ethanol production from cellulose by Clostridium cellulovorans overexpressing heterologous aldehyde/alcohol dehydrogenases JO - Biores Technol VL - 285 UR - https://doi.org/10.1016/j.biortech.2019.121316 DO - 10.1016/j.biortech.2019.121316 ID - Bao2019 ER - TY - JOUR AU - Hoang, P. T. N. AU - Ko, J. K. AU - Gong, G. AU - Um, Y. AU - Lee, S. -. M. PY - 2018 DA - 2018// TI - Genomic and phenotypic characterization of a refactored xylose-utilizing Saccharomyces cerevisiae strain for lignocellulosic biofuel production JO - Biotechnol Biofuels VL - 11 UR - https://doi.org/10.1186/s13068-018-1269-7 DO - 10.1186/s13068-018-1269-7 ID - Hoang2018 ER - TY - JOUR AU - Long, M. R. AU - Ong, W. K. AU - Reed, J. L. PY - 2015 DA - 2015// TI - Computational methods in metabolic engineering for strain design JO - Curr Opin Biotechnol VL - 34 UR - https://doi.org/10.1016/j.copbio.2014.12.019 DO - 10.1016/j.copbio.2014.12.019 ID - Long2015 ER - TY - JOUR AU - Shabestary, K. AU - Hudson, E. P. PY - 2016 DA - 2016// TI - Computational metabolic engineering strategies for growth-coupled biofuel production by Synechocystis JO - Metabolic Eng Commun VL - 3 UR - https://doi.org/10.1016/j.meteno.2016.07.003 DO - 10.1016/j.meteno.2016.07.003 ID - Shabestary2016 ER - TY - JOUR AU - Roointan, A. AU - Morowvat, M. H. PY - 2016 DA - 2016// TI - Road to the future of systems biotechnology: CRISPR-Cas-mediated metabolic engineering for recombinant protein production JO - Biotechnol Genet Eng Rev VL - 32 UR - https://doi.org/10.1080/02648725.2016.1270095 DO - 10.1080/02648725.2016.1270095 ID - Roointan2016 ER - TY - JOUR AU - Rollin, J. A. AU - Campo, J. M. AU - Myung, S. AU - Sun, F. AU - You, C. AU - Bakovic, A. AU - Castro, R. AU - Chandrayan, S. K. AU - Wu, C. -. H. AU - Adams, M. W. PY - 2015 DA - 2015// TI - High-yield hydrogen production from biomass by in vitro metabolic engineering: mixed sugars coutilization and kinetic modeling JO - Proc Natl Acad Sci VL - 112 UR - https://doi.org/10.1073/pnas.1417719112 DO - 10.1073/pnas.1417719112 ID - Rollin2015 ER - TY - JOUR AU - Jojima, T. AU - Noburyu, R. AU - Sasaki, M. AU - Tajima, T. AU - Suda, M. AU - Yukawa, H. AU - Inui, M. PY - 2015 DA - 2015// TI - Metabolic engineering for improved production of ethanol by Corynebacterium glutamicum JO - Appl Microbiol Biotechnol VL - 99 UR - https://doi.org/10.1007/s00253-014-6223-4 DO - 10.1007/s00253-014-6223-4 ID - Jojima2015 ER - TY - JOUR AU - Cho, S. AU - Shin, J. AU - Cho, B. -. K. PY - 2018 DA - 2018// TI - Applications of CRISPR/Cas system to bacterial metabolic engineering JO - Int J Mol Sci VL - 19 UR - https://doi.org/10.3390/ijms19041089 DO - 10.3390/ijms19041089 ID - Cho2018 ER - TY - JOUR AU - Agati, G. AU - Foschi, L. AU - Grossi, N. AU - Guglielminetti, L. AU - Cerovic, Z. G. PY - 2013 DA - 2013// TI - Fluorescence-based versus reflectance proximal sensing of nitrogen content in Paspalum vaginatum and Zoysia matrella turfgrasses JO - Eur J Agronomy VL - 45 UR - https://doi.org/10.1016/j.eja.2012.10.011 DO - 10.1016/j.eja.2012.10.011 ID - Agati2013 ER - TY - JOUR AU - Zhang, S. AU - Guo, F. AU - Yan, W. AU - Dai, Z. AU - Zhou, J. AU - Dong, W. AU - Jiang, M. AU - Zhang, W. AU - Xin, F. PY - 2019 DA - 2019// TI - Recent advances of CRISPR-Cas9-based genetic engineering in industrial biology JO - Front Bioeng Biotechnol VL - 7 UR - https://doi.org/10.3389/fbioe.2019.00459 DO - 10.3389/fbioe.2019.00459 ID - Zhang2019 ER - TY - JOUR AU - Jinek, M. AU - Chylinski, K. AU - Fonfara, I. AU - Hauer, M. AU - Doudna, J. A. AU - Charpentier, E. PY - 2012 DA - 2012// TI - A programmable dual-RNA–guided DNA endonuclease in adaptive bacterial immunity JO - Science VL - 337 UR - https://doi.org/10.1126/science.1225829 DO - 10.1126/science.1225829 ID - Jinek2012 ER - TY - JOUR AU - Deltcheva, E. AU - Chylinski, K. AU - Sharma, C. M. AU - Gonzales, K. AU - Chao, Y. AU - Pirzada, Z. A. AU - Eckert, M. R. AU - Vogel, J. AU - Charpentier, E. PY - 2011 DA - 2011// TI - CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III JO - Nature VL - 471 UR - https://doi.org/10.1038/nature09886 DO - 10.1038/nature09886 ID - Deltcheva2011 ER - TY - JOUR AU - Luo, M. L. AU - Mullis, A. S. AU - Leenay, R. T. AU - Beisel, C. L. PY - 2015 DA - 2015// TI - Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku971 DO - 10.1093/nar/gku971 ID - Luo2015 ER - TY - JOUR AU - Senturk, S. AU - Shirole, N. H. AU - Nowak, D. G. AU - Corbo, V. AU - Pal, D. AU - Vaughan, A. AU - Tuveson, D. A. AU - Trotman, L. C. AU - Kinney, J. B. AU - Sordella, R. PY - 2017 DA - 2017// TI - Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization JO - Nat Commun VL - 8 UR - https://doi.org/10.1038/ncomms14370 DO - 10.1038/ncomms14370 ID - Senturk2017 ER - TY - JOUR AU - Qi, L. S. AU - Larson, M. H. AU - Gilbert, L. A. AU - Doudna, J. A. AU - Weissman, J. S. AU - Arkin, A. P. AU - Lim, W. A. PY - 2013 DA - 2013// TI - Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression JO - Cell VL - 152 UR - https://doi.org/10.1016/j.cell.2013.02.022 DO - 10.1016/j.cell.2013.02.022 ID - Qi2013 ER - TY - JOUR AU - Carroll, D. PY - 2011 DA - 2011// TI - Genome engineering with zinc-finger nucleases JO - Genetics VL - 188 UR - https://doi.org/10.1534/genetics.111.131433 DO - 10.1534/genetics.111.131433 ID - Carroll2011 ER - TY - JOUR AU - Fokum, E. AU - Zabed, H. M. AU - Guo, Q. AU - Yun, J. AU - Yang, M. AU - Pang, H. AU - An, Y. AU - Li, W. AU - Qi, X. PY - 2019 DA - 2019// TI - Metabolic engineering of bacterial strains using CRISPR/Cas9 systems for biosynthesis of value-added products JO - Food Biosci VL - 28 UR - https://doi.org/10.1016/j.fbio.2019.01.003 DO - 10.1016/j.fbio.2019.01.003 ID - Fokum2019 ER - TY - JOUR AU - Moreno, A. M. AU - Mali, P. PY - 2017 DA - 2017// TI - Therapeutic genome engineering via CRISPR-Cas systems JO - Wiley Interdisciplinary Rev Syst Biol Med VL - 9 ID - Moreno2017 ER - TY - JOUR AU - d’Espaux, L. AU - Ghosh, A. AU - Runguphan, W. AU - Wehrs, M. AU - Xu, F. AU - Konzock, O. AU - Dev, I. AU - Nhan, M. AU - Gin, J. AU - Apel, A. R. PY - 2017 DA - 2017// TI - Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks JO - Metab Eng VL - 42 UR - https://doi.org/10.1016/j.ymben.2017.06.004 DO - 10.1016/j.ymben.2017.06.004 ID - d’Espaux2017 ER - TY - JOUR AU - Abdelaal, A. S. AU - Jawed, K. AU - Yazdani, S. S. PY - 2019 DA - 2019// TI - CRISPR/Cas9-mediated engineering of Escherichia coli for n-butanol production from xylose in defined medium JO - J Ind Microbiol Biotechnol VL - 46 UR - https://doi.org/10.1007/s10295-019-02180-8 DO - 10.1007/s10295-019-02180-8 ID - Abdelaal2019 ER - TY - JOUR AU - Wang, S. AU - Dong, S. AU - Wang, P. AU - Tao, Y. AU - Wang, Y. PY - 2017 DA - 2017// TI - Genome editing in Clostridium saccharoperbutylacetonicum N1–4 with the CRISPR-Cas9 system JO - Appl Environ Microbiol VL - 83 UR - https://doi.org/10.1128/AEM.00233-17 DO - 10.1128/AEM.00233-17 ID - Wang2017 ER - TY - JOUR AU - Wasels, F. AU - Jean-Marie, J. AU - Collas, F. AU - López-Contreras, A. M. AU - Ferreira, N. L. PY - 2017 DA - 2017// TI - A two-plasmid inducible CRISPR/Cas9 genome editing tool for Clostridium acetobutylicum JO - J Microbiol Methods VL - 140 UR - https://doi.org/10.1016/j.mimet.2017.06.010 DO - 10.1016/j.mimet.2017.06.010 ID - Wasels2017 ER - TY - JOUR AU - Wang, Y. AU - Chen, L. AU - Zhang, W. PY - 2016 DA - 2016// TI - Proteomic and metabolomic analyses reveal metabolic responses to 3-hydroxypropionic acid synthesized internally in cyanobacterium Synechocystis sp. PCC 6803 JO - Biotechnol Biofuels VL - 9 UR - https://doi.org/10.1186/s13068-016-0627-6 DO - 10.1186/s13068-016-0627-6 ID - Wang2016 ER - TY - JOUR AU - Alonso-Gutierrez, J. AU - Kim, E. -. M. AU - Batth, T. S. AU - Cho, N. AU - Hu, Q. AU - Chan, L. J. G. AU - Petzold, C. J. AU - Hillson, N. J. AU - Adams, P. D. AU - Keasling, J. D. PY - 2015 DA - 2015// TI - Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering JO - Metab Eng VL - 28 UR - https://doi.org/10.1016/j.ymben.2014.11.011 DO - 10.1016/j.ymben.2014.11.011 ID - Alonso-Gutierrez2015 ER - TY - JOUR AU - Bhandiwad, A. AU - Shaw, A. J. AU - Guss, A. AU - Guseva, A. AU - Bahl, H. AU - Lynd, L. R. PY - 2014 DA - 2014// TI - Metabolic engineering of Thermoanaerobacterium saccharolyticum for n-butanol production JO - Metab Eng VL - 21 UR - https://doi.org/10.1016/j.ymben.2013.10.012 DO - 10.1016/j.ymben.2013.10.012 ID - Bhandiwad2014 ER -