TY - JOUR AU - Kim, J. S. AU - Lee, Y. AU - Kim, T. H. PY - 2016 DA - 2016// TI - A review on alkaline pretreatment technology for bioconversion of lignocellulosic biomass JO - Bioresour Technol VL - 199 UR - https://doi.org/10.1016/j.biortech.2015.08.085 DO - 10.1016/j.biortech.2015.08.085 ID - Kim2016 ER - TY - JOUR AU - Hahn-Hägerdal, B. AU - Karhumaa, K. AU - Fonseca, C. AU - Spencer-Martins, I. AU - Gorwa-Grauslund, M. F. PY - 2007 DA - 2007// TI - Towards industrial pentose-fermenting yeast strains JO - Appl Microbiol Biotechnol. VL - 74 UR - https://doi.org/10.1007/s00253-006-0827-2 DO - 10.1007/s00253-006-0827-2 ID - Hahn-Hägerdal2007 ER - TY - JOUR AU - Paula, R. G. AU - Antonieto, A. C. C. AU - Ribeiro, L. F. C. AU - Srivastava, N. AU - O’Donovan, A. AU - Mishra, P. K. AU - Gupta, V. K. AU - Silva, R. N. PY - 2019 DA - 2019// TI - Engineered microbial host selection for value-added bioproducts from lignocellulose JO - Biotechnol Adv UR - https://doi.org/10.1016/j.biotechadv.2019.02.003 DO - 10.1016/j.biotechadv.2019.02.003 ID - Paula2019 ER - TY - JOUR AU - Dyk, J. S. AU - Pletschke, B. I. PY - 2012 DA - 2012// TI - A review of lignocellulose bioconversion using enzymatic hydrolysis and synergistic cooperation between enzymes–factors affecting enzymes, conversion and synergy JO - Biotechnol Adv VL - 30 UR - https://doi.org/10.1016/j.biotechadv.2012.03.002 DO - 10.1016/j.biotechadv.2012.03.002 ID - Dyk2012 ER - TY - JOUR AU - Buijs, N. A. AU - Siewers, V. AU - Nielsen, J. PY - 2013 DA - 2013// TI - Advanced biofuel production by the yeast Saccharomyces cerevisiae JO - Curr Opin Chem Biol VL - 17 UR - https://doi.org/10.1016/j.cbpa.2013.03.036 DO - 10.1016/j.cbpa.2013.03.036 ID - Buijs2013 ER - TY - JOUR AU - Park, J. M. AU - Vinuselvi, P. AU - Lee, S. K. PY - 2012 DA - 2012// TI - The mechanism of sugar-mediated catabolite repression of the propionate catabolic genes in Escherichia coli JO - Gene VL - 504 UR - https://doi.org/10.1016/j.gene.2012.04.074 DO - 10.1016/j.gene.2012.04.074 ID - Park2012 ER - TY - JOUR AU - Parachin, N. S. AU - Bergdahl, B. AU - Niel, E. W. AU - Gorwa-Grauslund, M. F. PY - 2011 DA - 2011// TI - Kinetic modelling reveals current limitations in the production of ethanol from xylose by recombinant Saccharomyces cerevisiae JO - Metab Eng VL - 13 UR - https://doi.org/10.1016/j.ymben.2011.05.005 DO - 10.1016/j.ymben.2011.05.005 ID - Parachin2011 ER - TY - JOUR AU - Young, E. M. AU - Comer, A. D. AU - Huang, H. AU - Alper, H. S. PY - 2012 DA - 2012// TI - A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae JO - Metab Eng VL - 14 UR - https://doi.org/10.1016/j.ymben.2012.03.004 DO - 10.1016/j.ymben.2012.03.004 ID - Young2012 ER - TY - JOUR AU - Young, E. M. AU - Tong, A. AU - Bui, H. AU - Spofford, C. AU - Alper, H. S. PY - 2014 DA - 2014// TI - Rewiring yeast sugar transporter preference through modifying a conserved protein motif JO - Proc Natl Acad Sci USA. VL - 111 UR - https://doi.org/10.1073/pnas.1311970111 DO - 10.1073/pnas.1311970111 ID - Young2014 ER - TY - JOUR AU - Tanimura, K. AU - Matsumoto, T. AU - Nakayama, H. AU - Tanaka, T. AU - Kondo, A. PY - 2016 DA - 2016// TI - Improvement of ectoine productivity by using sugar transporter-overexpressing Halomonas elongata JO - Enzyme Microb Technol VL - 89 UR - https://doi.org/10.1016/j.enzmictec.2016.03.006 DO - 10.1016/j.enzmictec.2016.03.006 ID - Tanimura2016 ER - TY - JOUR AU - Pao, S. S. AU - Paulsen, I. T. AU - Saier, M. H. PY - 1998 DA - 1998// TI - Major facilitator superfamily JO - Microbiol Mol Biol Rev VL - 62 UR - https://doi.org/10.1128/MMBR.62.1.1-34.1998 DO - 10.1128/MMBR.62.1.1-34.1998 ID - Pao1998 ER - TY - JOUR AU - Yan, N. PY - 2013 DA - 2013// TI - Structural advances for the major facilitator superfamily (MFS) transporters JO - Trends Biochem Sci VL - 38 UR - https://doi.org/10.1016/j.tibs.2013.01.003 DO - 10.1016/j.tibs.2013.01.003 ID - Yan2013 ER - TY - JOUR AU - Khankal, R. AU - Chin, J. W. AU - Cirino, P. C. PY - 2008 DA - 2008// TI - Role of xylose transporters in xylitol production from engineered Escherichia coli JO - J Biotechnol VL - 134 UR - https://doi.org/10.1016/j.jbiotec.2008.02.003 DO - 10.1016/j.jbiotec.2008.02.003 ID - Khankal2008 ER - TY - JOUR AU - Hasona, A. AU - Kim, Y. AU - Healy, F. G. AU - Ingram, L. O. AU - Shanmugam, K. T. PY - 2004 DA - 2004// TI - Pyruvate formate lyase and acetate kinase are essential for anaerobic growth of Escherichia coli on xylose JO - J Bacteriol VL - 186 UR - https://doi.org/10.1128/JB.186.22.7593-7600.2004 DO - 10.1128/JB.186.22.7593-7600.2004 ID - Hasona2004 ER - TY - JOUR AU - Sumiya, M. AU - Davis, E. O. AU - Packman, L. C. AU - McDonald, T. P. AU - Henderson, P. J. PY - 1995 DA - 1995// TI - Molecular genetics of a receptor protein for D-xylose, encoded by the gene xylF, in Escherichia coli JO - Recept Channels VL - 3 ID - Sumiya1995 ER - TY - JOUR AU - Sun, L. AU - Zeng, X. AU - Yan, C. AU - Sun, X. AU - Gong, X. AU - Rao, Y. AU - Yan, N. PY - 2012 DA - 2012// TI - Crystal structure of a bacterial homologue of glucose transporters GLUT1-4 JO - Nature VL - 490 UR - https://doi.org/10.1038/nature11524 DO - 10.1038/nature11524 ID - Sun2012 ER - TY - JOUR AU - Sofia, H. J. AU - Burland, V. AU - Daniels, D. L. AU - Plunkett, G. AU - Blattner, F. R. PY - 1994 DA - 1994// TI - Analysis of the Escherichia coli genome V DNA sequence of the region from 76.0 to 81.5 minutes JO - Nucleic Acids Res. VL - 22 UR - https://doi.org/10.1093/nar/22.13.2576 DO - 10.1093/nar/22.13.2576 ID - Sofia1994 ER - TY - JOUR AU - Ahlem, C. AU - Huisman, W. AU - Neslund, G. AU - Dahms, A. S. PY - 1982 DA - 1982// TI - Purification and properties of a periplasmic d-xylose-binding protein from Escherichia coli K-12 JO - J Biol Chem VL - 257 ID - Ahlem1982 ER - TY - JOUR AU - Jones, D. T. AU - Woods, D. R. PY - 1986 DA - 1986// TI - Acetone-butanol fermentation revisited JO - Microb Rev. VL - 50 ID - Jones1986 ER - TY - JOUR AU - Gu, Y. AU - Ding, Y. AU - Ren, C. AU - Sun, Z. AU - Rodionov, D. A. AU - Zhang, W. AU - Yang, S. AU - Yang, C. AU - Jiang, W. PY - 2010 DA - 2010// TI - Reconstruction of xylose utilization pathway and regulons in Firmicutes JO - BMC Genomics. VL - 11 UR - https://doi.org/10.1186/1471-2164-11-255 DO - 10.1186/1471-2164-11-255 ID - Gu2010 ER - TY - JOUR AU - Gu, Y. AU - Jiang, Y. AU - Yang, S. AU - Jiang, W. PY - 2014 DA - 2014// TI - Utilization of economical substrate-derived carbohydrates by solventogenic clostridia: pathway dissection, regulation and engineering JO - Curr Opin Biotechnol. VL - 29 UR - https://doi.org/10.1016/j.copbio.2014.04.004 DO - 10.1016/j.copbio.2014.04.004 ID - Gu2014 ER - TY - JOUR AU - Wagner, M. AU - Shen, L. AU - Albersmeier, A. AU - Kolk, N. AU - Kim, S. AU - Cha, J. AU - Bräsen, C. AU - Kalinowski, J. AU - Siebers, B. AU - Albers, S. -. V. PY - 2018 DA - 2018// TI - Sulfolobus acidocaldarius transports pentoses via a carbohydrate uptake transporter 2 (CUT2)-type ABC transporter and metabolizes them through the aldolase-independent Weimberg pathway JO - Appl Environ Microbiol VL - 84 ID - Wagner2018 ER - TY - JOUR AU - Elferink, M. G. AU - Albers, S. V. AU - Konings, W. N. AU - Driessen, A. J. PY - 2001 DA - 2001// TI - Sugar transport in Sulfolobus solfataricus is mediated by two families of binding protein-dependent ABC transporters JO - Mol Microbiol VL - 39 UR - https://doi.org/10.1046/j.1365-2958.2001.02336.x DO - 10.1046/j.1365-2958.2001.02336.x ID - Elferink2001 ER - TY - JOUR AU - Choi, K. -. H. AU - Hwang, S. AU - Cha, J. PY - 2013 DA - 2013// TI - Identification and characterization of MalA in the maltose/maltodextrin operon of Sulfolobus acidocaldarius DSM639 JO - J Bacteriol VL - 195 UR - https://doi.org/10.1128/JB.01713-12 DO - 10.1128/JB.01713-12 ID - Choi2013 ER - TY - JOUR AU - Song, S. AU - Park, C. PY - 1997 DA - 1997// TI - Organization and regulation of the D-xylose operons in Escherichia coli K-12: XylR acts as a transcriptional activator JO - J Bacteriol VL - 179 UR - https://doi.org/10.1128/JB.179.22.7025-7032.1997 DO - 10.1128/JB.179.22.7025-7032.1997 ID - Song1997 ER - TY - JOUR AU - Kim, J. H. AU - Block, D. E. AU - Mills, D. A. PY - 2010 DA - 2010// TI - Simultaneous consumption of pentose and hexose sugars: an optimal microbial phenotype for efficient fermentation of lignocellulosic biomass JO - Appl Microbiol Biotechnol VL - 88 UR - https://doi.org/10.1007/s00253-010-2839-1 DO - 10.1007/s00253-010-2839-1 ID - Kim2010 ER - TY - JOUR AU - Gorke, B. AU - Stulke, J. PY - 2008 DA - 2008// TI - Carbon catabolite repression in bacteria: many ways to make the most out of nutrients JO - Nat Rev Microbiol VL - 6 UR - https://doi.org/10.1038/nrmicro1932 DO - 10.1038/nrmicro1932 ID - Gorke2008 ER - TY - JOUR AU - Karimova, G. AU - Ladant, D. AU - Ullmann, A. PY - 2004 DA - 2004// TI - Relief of catabolite repression in a cAMP-independent catabolite gene activator mutant of Escherichia coli JO - Res Microbiol VL - 155 UR - https://doi.org/10.1016/j.resmic.2003.11.002 DO - 10.1016/j.resmic.2003.11.002 ID - Karimova2004 ER - TY - JOUR AU - Cirino, P. C. AU - Chin, J. W. AU - Ingram, L. O. PY - 2006 DA - 2006// TI - Engineering Escherichia coli for xylitol production from glucose-xylose mixtures JO - Biotechnol Bioeng VL - 95 UR - https://doi.org/10.1002/bit.21082 DO - 10.1002/bit.21082 ID - Cirino2006 ER - TY - JOUR AU - Khankal, R. AU - Luziatelli, F. AU - Chin, J. W. AU - Frei, C. S. AU - Cirino, P. C. PY - 2008 DA - 2008// TI - Comparison between Escherichia coli K-12 strains W3110 and MG1655 and wild-type E. coli B as platforms for xylitol production JO - Biotechnol Lett. VL - 30 UR - https://doi.org/10.1007/s10529-008-9720-7 DO - 10.1007/s10529-008-9720-7 ID - Khankal2008 ER - TY - JOUR AU - Gonzalez, R. AU - Tao, H. AU - Shanmugam, K. T. AU - York, S. W. AU - Ingram, L. O. PY - 2002 DA - 2002// TI - Global gene expression differences associated with changes in glycolytic flux and growth rate in Escherichia coli during the fermentation of glucose and xylose JO - Biotechnol Prog VL - 18 UR - https://doi.org/10.1021/bp010121i DO - 10.1021/bp010121i ID - Gonzalez2002 ER - TY - JOUR AU - Xiao, H. AU - Li, Z. AU - Jiang, Y. AU - Yang, Y. AU - Jiang, W. AU - Gu, Y. AU - Yang, S. PY - 2012 DA - 2012// TI - Metabolic engineering of d-xylose pathway in Clostridium beijerinckii to optimize solvent production from xylose mother liquid JO - Meta Eng. VL - 14 UR - https://doi.org/10.1016/j.ymben.2012.05.003 DO - 10.1016/j.ymben.2012.05.003 ID - Xiao2012 ER - TY - JOUR AU - Warner, J. B. AU - Lolkema, J. S. PY - 2003 DA - 2003// TI - CcpA-dependent carbon catabolite repression in bacteria JO - Microbiol Mol Biol Rev VL - 67 UR - https://doi.org/10.1128/MMBR.67.4.475-490.2003 DO - 10.1128/MMBR.67.4.475-490.2003 ID - Warner2003 ER - TY - JOUR AU - Du, J. AU - Li, S. AU - Zhao, H. PY - 2010 DA - 2010// TI - Discovery and characterization of novel d-xylose-specific transporters from Neurospora crassa and Pichia stipitis JO - Mol Biosyst. VL - 6 UR - https://doi.org/10.1039/c0mb00007h DO - 10.1039/c0mb00007h ID - Du2010 ER - TY - JOUR AU - Saloheimo, A. AU - Rauta, J. AU - Stasyk, O. V. AU - Sibirny, A. A. AU - Penttila, M. AU - Ruohonen, L. PY - 2007 DA - 2007// TI - Xylose transport studies with xylose-utilizing Saccharomyces cerevisiae strains expressing heterologous and homologous permeases JO - Appl Microbiol Biotechnol VL - 74 UR - https://doi.org/10.1007/s00253-006-0747-1 DO - 10.1007/s00253-006-0747-1 ID - Saloheimo2007 ER - TY - JOUR AU - Colabardini, A. C. AU - Ries, L. N. AU - Brown, N. A. AU - Reis, T. F. AU - Savoldi, M. AU - Goldman, M. H. AU - Menino, J. F. AU - Rodrigues, F. AU - Goldman, G. H. PY - 2014 DA - 2014// TI - Functional characterization of a xylose transporter in Aspergillus nidulans JO - Biotechnol Biofuels VL - 7 UR - https://doi.org/10.1186/1754-6834-7-46 DO - 10.1186/1754-6834-7-46 ID - Colabardini2014 ER - TY - JOUR AU - Ferreira, M. E. AU - Colombo, A. L. AU - Paulsen, I. AU - Ren, Q. AU - Wortman, J. AU - Huang, J. AU - Goldman, M. H. AU - Goldman, G. H. PY - 2005 DA - 2005// TI - The ergosterol biosynthesis pathway, transporter genes, and azole resistance in Aspergillus fumigatus JO - Med Mycol VL - 43 UR - https://doi.org/10.1080/13693780400029114 DO - 10.1080/13693780400029114 ID - Ferreira2005 ER - TY - JOUR AU - Reis, T. F. AU - Lima, P. B. AU - Parachin, N. S. AU - Mingossi, F. B. AU - Castro Oliveira, J. V. AU - Ries, L. N. AU - Goldman, G. H. PY - 2016 DA - 2016// TI - Identification and characterization of putative xylose and cellobiose transporters in Aspergillus nidulans JO - Biotechnol Biofuels VL - 9 UR - https://doi.org/10.1186/s13068-016-0611-1 DO - 10.1186/s13068-016-0611-1 ID - Reis2016 ER - TY - JOUR AU - Ries, L. AU - Pullan, S. T. AU - Delmas, S. AU - Malla, S. AU - Blythe, M. J. AU - Archer, D. B. PY - 2013 DA - 2013// TI - Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger JO - BMC Genomics. VL - 14 UR - https://doi.org/10.1186/1471-2164-14-541 DO - 10.1186/1471-2164-14-541 ID - Ries2013 ER - TY - JOUR AU - Vankuyk, P. A. AU - Diderich, J. A. AU - MacCabe, A. P. AU - Hererro, O. AU - Ruijter, G. J. AU - Visser, J. PY - 2004 DA - 2004// TI - Aspergillus niger mstA encodes a high-affinity sugar/H+ symporter which is regulated in response to extracellular pH JO - Biochem J. VL - 379 UR - https://doi.org/10.1042/bj20030624 DO - 10.1042/bj20030624 ID - Vankuyk2004 ER - TY - JOUR AU - Wang, C. AU - Bao, X. AU - Li, Y. AU - Jiao, C. AU - Hou, J. AU - Zhang, Q. AU - Zhang, W. AU - Liu, W. AU - Shen, Y. PY - 2015 DA - 2015// TI - Data set for cloning and characterization of heterologous transporters in Saccharomyces cerevisiae and identification of important amino acids for xylose utilization JO - Data Brief. VL - 4 UR - https://doi.org/10.1016/j.dib.2015.05.005 DO - 10.1016/j.dib.2015.05.005 ID - Wang2015 ER - TY - JOUR AU - Wang, M. AU - Yu, C. AU - Zhao, H. PY - 2016 DA - 2016// TI - Directed evolution of xylose specific transporters to facilitate glucose-xylose co-utilization JO - Biotechnol Bioeng VL - 113 UR - https://doi.org/10.1002/bit.25724 DO - 10.1002/bit.25724 ID - Wang2016 ER - TY - STD TI - Jeffries TW. Utilization of xylose by bacteria, yeasts, and fungi. In: Pentoses and Lignin. Berlin: Springer; 1983: p. 1–32. ID - ref43 ER - TY - JOUR AU - Mishra, P. AU - Singh, A. PY - 1993 DA - 1993// TI - Microbial pentose utilization JO - Adv Appl Microbiol VL - 39 UR - https://doi.org/10.1016/S0065-2164(08)70594-X DO - 10.1016/S0065-2164(08)70594-X ID - Mishra1993 ER - TY - JOUR AU - Wang, P. Y. AU - Shopsis, C. AU - Schneider, H. PY - 1980 DA - 1980// TI - Fermentation of a pentose by yeasts JO - Biochem Biophys Res Commun VL - 94 UR - https://doi.org/10.1016/S0006-291X(80)80213-0 DO - 10.1016/S0006-291X(80)80213-0 ID - Wang1980 ER - TY - JOUR AU - Scalcinati, G. AU - Otero, J. M. AU - Vleet, J. R. AU - Jeffries, T. W. AU - Olsson, L. AU - Nielsen, J. PY - 2012 DA - 2012// TI - Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption JO - FEMS Yeast Res VL - 12 UR - https://doi.org/10.1111/j.1567-1364.2012.00808.x DO - 10.1111/j.1567-1364.2012.00808.x ID - Scalcinati2012 ER - TY - JOUR AU - Liu, L. AU - Zhang, L. AU - Tang, W. AU - Gu, Y. AU - Hua, Q. AU - Yang, S. AU - Jiang, W. AU - Yang, C. PY - 2012 DA - 2012// TI - Phosphoketolase pathway for xylose catabolism in Clostridium acetobutylicum revealed by 13C metabolic flux analysis JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.00713-12 DO - 10.1128/JB.00713-12 ID - Liu2012 ER - TY - JOUR AU - Tanaka, K. AU - Komiyama, A. AU - Sonomoto, K. AU - Ishizaki, A. AU - Hall, S. J. AU - Stanbury, P. F. PY - 2002 DA - 2002// TI - Two different pathways for d-xylose metabolism and the effect of xylose concentration on the yield coefficient of l-lactate in mixed-acid fermentation by the lactic acid bacterium Lactococcus lactis IO-1 JO - Appl Microbiol Biotechnol VL - 60 UR - https://doi.org/10.1007/s00253-002-1078-5 DO - 10.1007/s00253-002-1078-5 ID - Tanaka2002 ER - TY - JOUR AU - Stephens, C. AU - Christen, B. AU - Fuchs, T. AU - Sundaram, V. AU - Watanabe, K. AU - Jenal, U. PY - 2007 DA - 2007// TI - Genetic analysis of a novel pathway for d-xylose metabolism in Caulobacter crescentus JO - J Bacteriol VL - 189 UR - https://doi.org/10.1128/JB.01438-06 DO - 10.1128/JB.01438-06 ID - Stephens2007 ER - TY - JOUR AU - Stephens, C. AU - Christen, B. AU - Watanabe, K. AU - Fuchs, T. AU - Jenal, U. PY - 2007 DA - 2007// TI - Regulation of d-xylose metabolism in Caulobacter crescentus by a LacI-type repressor JO - J Bacteriol VL - 189 UR - https://doi.org/10.1128/JB.01342-07 DO - 10.1128/JB.01342-07 ID - Stephens2007 ER - TY - JOUR AU - Meisenzahl, A. C. AU - Shapiro, L. AU - Jenal, U. PY - 1997 DA - 1997// TI - Isolation and characterization of a xylose-dependent promoter from Caulobacter crescentus JO - J Bacteriol VL - 179 UR - https://doi.org/10.1128/JB.179.3.592-600.1997 DO - 10.1128/JB.179.3.592-600.1997 ID - Meisenzahl1997 ER - TY - JOUR AU - Dahms, A. S. PY - 1974 DA - 1974// TI - 3-Deoxy-d-pentulosonic acid aldolase and its role in a new pathway of D-xylose degradation JO - Biochem Biophys Res Commun VL - 60 UR - https://doi.org/10.1016/0006-291X(74)90358-1 DO - 10.1016/0006-291X(74)90358-1 ID - Dahms1974 ER - TY - JOUR AU - Nunn, C. E. AU - Johnsen, U. AU - Schönheit, P. AU - Fuhrer, T. AU - Sauer, U. AU - Hough, D. W. AU - Danson, M. J. PY - 2010 DA - 2010// TI - Metabolism of pentose sugars in the hyperthermophilic archaea Sulfolobus solfataricus and Sulfolobus acidocaldarius JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.M110.146332 DO - 10.1074/jbc.M110.146332 ID - Nunn2010 ER - TY - JOUR AU - Siebers, B. AU - Schönheit, P. PY - 2005 DA - 2005// TI - Unusual pathways and enzymes of central carbohydrate metabolism in Archaea JO - Curr Opin Microbiol VL - 8 UR - https://doi.org/10.1016/j.mib.2005.10.014 DO - 10.1016/j.mib.2005.10.014 ID - Siebers2005 ER - TY - JOUR AU - Johnsen, U. AU - Dambeck, M. AU - Zaiss, H. AU - Fuhrer, T. AU - Soppa, J. AU - Sauer, U. AU - Schönheit, P. PY - 2009 DA - 2009// TI - D-xylose degradation pathway in the halophilic archaeon Haloferax volcanii JO - J Biol Chem VL - 284 UR - https://doi.org/10.1074/jbc.M109.003814 DO - 10.1074/jbc.M109.003814 ID - Johnsen2009 ER - TY - JOUR AU - Johnsen, U. AU - Sutter, J. M. AU - Schulz, A. C. AU - Tästensen, J. B. AU - Schönheit, P. PY - 2015 DA - 2015// TI - XacR—a novel transcriptional regulator of d-xylose and l-arabinose catabolism in the haloarchaeon H aloferax volcanii JO - Environ Microbiol VL - 17 UR - https://doi.org/10.1111/1462-2920.12603 DO - 10.1111/1462-2920.12603 ID - Johnsen2015 ER - TY - JOUR AU - Young, E. AU - Lee, S. M. AU - Alper, H. PY - 2010 DA - 2010// TI - Optimizing pentose utilization in yeast: the need for novel tools and approaches JO - Biotechnol Biofuels VL - 3 UR - https://doi.org/10.1186/1754-6834-3-24 DO - 10.1186/1754-6834-3-24 ID - Young2010 ER - TY - JOUR AU - Wang, Y. AU - Shi, W. L. AU - Liu, X. Y. AU - Shen, Y. AU - Bao, X. M. AU - Bai, F. W. AU - Qu, Y. B. PY - 2004 DA - 2004// TI - Establishment of a xylose metabolic pathway in an industrial strain of Saccharomyces cerevisiae JO - Biotechnol Lett VL - 26 UR - https://doi.org/10.1023/B:bile.0000025897.21106.92 DO - 10.1023/B:bile.0000025897.21106.92 ID - Wang2004 ER - TY - JOUR AU - Kawaguchi, H. AU - Vertes, A. A. AU - Okino, S. AU - Inui, M. AU - Yukawa, H. PY - 2006 DA - 2006// TI - Engineering of a xylose metabolic pathway in Corynebacterium glutamicum JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.72.5.3418-3428.2006 DO - 10.1128/AEM.72.5.3418-3428.2006 ID - Kawaguchi2006 ER - TY - JOUR AU - Zhang, M. AU - Eddy, C. AU - Deanda, K. AU - Finkelstein, M. AU - Picataggio, S. PY - 1995 DA - 1995// TI - Metabolic engineering of a pentose metabolism pathway in Ethanologenic Zymomonas mobilis JO - Science VL - 267 UR - https://doi.org/10.1126/science.267.5195.240 DO - 10.1126/science.267.5195.240 ID - Zhang1995 ER - TY - JOUR AU - Farwick, A. AU - Bruder, S. AU - Schadeweg, V. AU - Oreb, M. AU - Boles, E. PY - 2014 DA - 2014// TI - Engineering of yeast hexose transporters to transport d-xylose without inhibition by d-glucose JO - Proc Natl Acad Sci USA. VL - 111 UR - https://doi.org/10.1073/pnas.1323464111 DO - 10.1073/pnas.1323464111 ID - Farwick2014 ER - TY - JOUR AU - Kasahara, T. AU - Shimogawara, K. AU - Kasahara, M. PY - 2011 DA - 2011// TI - Crucial effects of amino acid side chain length in transmembrane segment 5 on substrate affinity in yeast glucose transporter Hxt7 JO - Biochemistry VL - 50 UR - https://doi.org/10.1021/bi200958s DO - 10.1021/bi200958s ID - Kasahara2011 ER - TY - JOUR AU - Zhang, B. AU - Zhang, J. AU - Wang, D. AU - Han, R. AU - Ding, R. AU - Gao, X. AU - Sun, L. AU - Hong, J. PY - 2016 DA - 2016// TI - Simultaneous fermentation of glucose and xylose at elevated temperatures co-produces ethanol and xylitol through overexpression of a xylose-specific transporter in engineered Kluyveromyces marxianus JO - Bioresour Technol VL - 216 UR - https://doi.org/10.1016/j.biortech.2016.05.068 DO - 10.1016/j.biortech.2016.05.068 ID - Zhang2016 ER - TY - JOUR AU - Ostergaard, S. AU - Olsson, L. AU - Nielsen, J. PY - 2000 DA - 2000// TI - Metabolic engineering of Saccharomyces cerevisiae JO - Microbiol Mol Biol Rev VL - 64 UR - https://doi.org/10.1128/MMBR.64.1.34-50.2000 DO - 10.1128/MMBR.64.1.34-50.2000 ID - Ostergaard2000 ER - TY - JOUR AU - Lee, J. K. AU - Koo, B. S. AU - Kim, S. Y. PY - 2003 DA - 2003// TI - Cloning and characterization of the xyl1 gene, encoding an NADH-preferring xylose reductase from Candida parapsilosis, and its functional expression in Candida tropicalis JO - Appl Environ Microbiol VL - 69 UR - https://doi.org/10.1128/AEM.69.10.6179-6188.2003 DO - 10.1128/AEM.69.10.6179-6188.2003 ID - Lee2003 ER - TY - JOUR AU - Lee, H. PY - 1998 DA - 1998// TI - The structure and function of yeast xylose (aldose) reductases JO - Yeast VL - 14 UR - https://doi.org/3.0.CO;2-J DO - 3.0.CO;2-J ID - Lee1998 ER - TY - JOUR AU - Bengtsson, O. AU - Hahn-Hagerdal, B. AU - Gorwa-Grauslund, M. F. PY - 2009 DA - 2009// TI - Xylose reductase from Pichia stipitis with altered coenzyme preference improves ethanolic xylose fermentation by recombinant Saccharomyces cerevisiae JO - Biotechnol Biofuels VL - 2 UR - https://doi.org/10.1186/1754-6834-2-9 DO - 10.1186/1754-6834-2-9 ID - Bengtsson2009 ER - TY - JOUR AU - Watanabe, S. AU - Kodaki, T. AU - Makino, K. PY - 2005 DA - 2005// TI - Complete reversal of coenzyme specificity of xylitol dehydrogenase and increase of thermostability by the introduction of structural zinc JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M409443200 DO - 10.1074/jbc.M409443200 ID - Watanabe2005 ER - TY - JOUR AU - Watanabe, S. AU - Saleh, A. A. AU - Pack, S. P. AU - Annaluru, N. AU - Kodaki, T. AU - Makino, K. PY - 2007 DA - 2007// TI - Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein engineered NADP+-dependent xylitol dehydrogenase JO - J Biotechnol VL - 130 UR - https://doi.org/10.1016/j.jbiotec.2007.04.019 DO - 10.1016/j.jbiotec.2007.04.019 ID - Watanabe2007 ER - TY - JOUR AU - Du, J. AU - Yuan, Y. AU - Si, T. AU - Lian, J. AU - Zhao, H. PY - 2012 DA - 2012// TI - Customized optimization of metabolic pathways by combinatorial transcriptional engineering JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks549 DO - 10.1093/nar/gks549 ID - Du2012 ER - TY - JOUR AU - Utrilla, J. AU - Licona-Cassani, C. AU - Marcellin, E. AU - Gosset, G. AU - Nielsen, L. K. AU - Martinez, A. PY - 2012 DA - 2012// TI - Engineering and adaptive evolution of Escherichia coli for d-lactate fermentation reveals GatC as a xylose transporter JO - Metab Eng VL - 14 UR - https://doi.org/10.1016/j.ymben.2012.07.007 DO - 10.1016/j.ymben.2012.07.007 ID - Utrilla2012 ER - TY - JOUR AU - Zeng, W. Y. AU - Tang, Y. Q. AU - Gou, M. AU - Sun, Z. Y. AU - Xia, Z. Y. AU - Kida, K. PY - 2017 DA - 2017// TI - Comparative transcriptomes reveal novel evolutionary strategies adopted by Saccharomyces cerevisiae with improved xylose utilization capability JO - Appl Microbiol Biotechnol VL - 101 UR - https://doi.org/10.1007/s00253-016-8046-y DO - 10.1007/s00253-016-8046-y ID - Zeng2017 ER - TY - JOUR AU - Liu, R. AU - Liang, L. AU - Chen, K. AU - Ma, J. AU - Jiang, M. AU - Wei, P. AU - Ouyang, P. PY - 2012 DA - 2012// TI - Fermentation of xylose to succinate by enhancement of ATP supply in metabolically engineered Escherichia coli JO - Appl Microbiol Biotechnol VL - 94 UR - https://doi.org/10.1007/s00253-012-3896-4 DO - 10.1007/s00253-012-3896-4 ID - Liu2012 ER - TY - JOUR AU - Zhang, F. AU - Li, J. AU - Liu, H. AU - Liang, Q. AU - Qi, Q. PY - 2016 DA - 2016// TI - ATP-Based ratio regulation of glucose and xylose improved succinate production JO - PLoS ONE VL - 11 UR - https://doi.org/10.1371/journal.pone.0157775 DO - 10.1371/journal.pone.0157775 ID - Zhang2016 ER - TY - JOUR AU - Kim, S. R. AU - Park, Y. -. C. AU - Jin, Y. -. S. AU - Seo, J. -. H. PY - 2013 DA - 2013// TI - Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism JO - Biotechnol Adv VL - 31 UR - https://doi.org/10.1016/j.biotechadv.2013.03.004 DO - 10.1016/j.biotechadv.2013.03.004 ID - Kim2013 ER - TY - JOUR AU - Panesar, P. S. AU - Marwaha, S. S. AU - Kennedy, J. F. PY - 2006 DA - 2006// TI - Zymomonas mobilis: an alternative ethanol producer JO - J Chem Technol Biotechnol VL - 81 UR - https://doi.org/10.1002/jctb.1448 DO - 10.1002/jctb.1448 ID - Panesar2006 ER - TY - JOUR AU - Agrawal, M. AU - Mao, Z. AU - Chen, R. R. PY - 2011 DA - 2011// TI - Adaptation yields a highly efficient xylose-fermenting Zymomonas mobilis strain JO - Biotechnol Bioeng VL - 108 UR - https://doi.org/10.1002/bit.23021 DO - 10.1002/bit.23021 ID - Agrawal2011 ER - TY - JOUR AU - Cao, Y. AU - Niu, W. AU - Guo, J. AU - Xian, M. AU - Liu, H. PY - 2015 DA - 2015// TI - Biotechnological production of 1,2,4-butanetriol: an efficient process to synthesize energetic material precursor from renewable biomass JO - Sci Rep. VL - 5 UR - https://doi.org/10.1038/srep18149 DO - 10.1038/srep18149 ID - Cao2015 ER - TY - JOUR AU - Burgard, A. AU - Burk, M. J. AU - Osterhout, R. AU - Dien, S. AU - Yim, H. PY - 2016 DA - 2016// TI - Development of a commercial scale process for production of 1,4-butanediol from sugar JO - Curr Opin Biotechnol VL - 42 UR - https://doi.org/10.1016/j.copbio.2016.04.016 DO - 10.1016/j.copbio.2016.04.016 ID - Burgard2016 ER - TY - JOUR AU - Niu, W. AU - Molefe, M. N. AU - Frost, J. W. PY - 2003 DA - 2003// TI - Microbial synthesis of the energetic material precursor 1,2,4-butanetriol JO - J Am Chem Soc VL - 125 UR - https://doi.org/10.1021/ja036391+ DO - 10.1021/ja036391+ ID - Niu2003 ER - TY - JOUR AU - Zhang, N. AU - Wang, J. AU - Zhang, Y. AU - Gao, H. PY - 2016 DA - 2016// TI - Metabolic pathway optimization for biosynthesis of 1,2,4-butanetriol from xylose by engineered Escherichia coli JO - Enzyme Microb Technol VL - 93–94 UR - https://doi.org/10.1016/j.enzmictec.2016.07.007 DO - 10.1016/j.enzmictec.2016.07.007 ID - Zhang2016 ER - TY - JOUR AU - Wang, J. AU - Jain, R. AU - Shen, X. AU - Sun, X. AU - Cheng, M. AU - Liao, J. C. AU - Yuan, Q. AU - Yan, Y. PY - 2017 DA - 2017// TI - Rational engineering of diol dehydratase enables 1,4-butanediol biosynthesis from xylose JO - Metab Eng VL - 40 UR - https://doi.org/10.1016/j.ymben.2017.02.003 DO - 10.1016/j.ymben.2017.02.003 ID - Wang2017 ER - TY - JOUR AU - Pereira, B. AU - Li, Z. J. AU - Mey, M. AU - Lim, C. G. AU - Zhang, H. AU - Hoeltgen, C. AU - Stephanopoulos, G. PY - 2016 DA - 2016// TI - Efficient utilization of pentoses for bioproduction of the renewable two-carbon compounds ethylene glycol and glycolate JO - Metab Eng VL - 34 UR - https://doi.org/10.1016/j.ymben.2015.12.004 DO - 10.1016/j.ymben.2015.12.004 ID - Pereira2016 ER - TY - JOUR AU - Liu, M. AU - Ding, Y. AU - Xian, M. AU - Zhao, G. PY - 2018 DA - 2018// TI - Metabolic engineering of a xylose pathway for biotechnological production of glycolate in Escherichia coli JO - Microb Cell Fact VL - 17 UR - https://doi.org/10.1186/s12934-018-0900-4 DO - 10.1186/s12934-018-0900-4 ID - Liu2018 ER - TY - JOUR AU - Liu, H. AU - Ramos, K. R. AU - Valdehuesa, K. N. AU - Nisola, G. M. AU - Lee, W. K. AU - Chung, W. J. PY - 2013 DA - 2013// TI - Biosynthesis of ethylene glycol in Escherichia coli JO - Appl Microbiol Biotechnol VL - 97 UR - https://doi.org/10.1007/s00253-012-4618-7 DO - 10.1007/s00253-012-4618-7 ID - Liu2013 ER - TY - JOUR AU - Alkim, C. AU - Cam, Y. AU - Trichez, D. AU - Auriol, C. AU - Spina, L. AU - Vax, A. AU - Bartolo, F. AU - Besse, P. AU - Francois, J. M. AU - Walther, T. PY - 2015 DA - 2015// TI - Optimization of ethylene glycol production from (d)-xylose via a synthetic pathway implemented in Escherichia coli JO - Microb Cell Fact VL - 14 UR - https://doi.org/10.1186/s12934-015-0312-7 DO - 10.1186/s12934-015-0312-7 ID - Alkim2015 ER - TY - JOUR AU - Wang, Y. AU - Xian, M. AU - Feng, X. AU - Liu, M. AU - Zhao, G. PY - 2018 DA - 2018// TI - Biosynthesis of ethylene glycol from d-xylose in recombinant Escherichia coli JO - Bioengineered VL - 9 UR - https://doi.org/10.1080/21655979.2018.1478489 DO - 10.1080/21655979.2018.1478489 ID - Wang2018 ER - TY - JOUR AU - Chae, T. U. AU - Choi, S. Y. AU - Ryu, J. Y. AU - Lee, S. Y. PY - 2018 DA - 2018// TI - Production of ethylene glycol from xylose by metabolically engineered Escherichia coli JO - AIChE J VL - 64 UR - https://doi.org/10.1002/aic.16339 DO - 10.1002/aic.16339 ID - Chae2018 ER - TY - JOUR AU - Zhou, H. AU - Cheng, J. S. AU - Wang, B. L. AU - Fink, G. R. AU - Stephanopoulos, G. PY - 2012 DA - 2012// TI - Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae JO - Metab Eng VL - 14 UR - https://doi.org/10.1016/j.ymben.2012.07.011 DO - 10.1016/j.ymben.2012.07.011 ID - Zhou2012 ER - TY - JOUR AU - Lee, S. H. AU - Kodaki, T. AU - Park, Y. C. AU - Seo, J. H. PY - 2012 DA - 2012// TI - Effects of NADH-preferring xylose reductase expression on ethanol production from xylose in xylose-metabolizing recombinant Saccharomyces cerevisiae JO - J Biotechnol VL - 158 UR - https://doi.org/10.1016/j.jbiotec.2011.06.005 DO - 10.1016/j.jbiotec.2011.06.005 ID - Lee2012 ER - TY - JOUR AU - Valdehuesa, K. N. G. AU - Liu, H. AU - Ramos, K. R. M. AU - Park, S. J. AU - Nisola, G. M. AU - Lee, W. K. AU - Chung, W. J. PY - 2014 DA - 2014// TI - Direct bioconversion of d-xylose to 1,2,4-butanetriol in an engineered Escherichia coli JO - Process Biochem VL - 49 UR - https://doi.org/10.1016/j.procbio.2013.10.002 DO - 10.1016/j.procbio.2013.10.002 ID - Valdehuesa2014 ER - TY - JOUR AU - Koivistoinen, O. M. AU - Kuivanen, J. AU - Barth, D. AU - Turkia, H. AU - Pitkanen, J. P. AU - Penttila, M. AU - Richard, P. PY - 2013 DA - 2013// TI - Glycolic acid production in the engineered yeasts Saccharomyces cerevisiae and Kluyveromyces lactis JO - Microb Cell Fact VL - 12 UR - https://doi.org/10.1186/1475-2859-12-82 DO - 10.1186/1475-2859-12-82 ID - Koivistoinen2013 ER - TY - JOUR AU - Cabulong, R. B. AU - Lee, W. K. AU - Banares, A. B. AU - Ramos, K. R. M. AU - Nisola, G. M. AU - Valdehuesa, K. N. G. AU - Chung, W. J. PY - 2018 DA - 2018// TI - Engineering Escherichia coli for glycolic acid production from d-xylose through the Dahms pathway and glyoxylate bypass JO - Appl Microbiol Biotechnol VL - 102 UR - https://doi.org/10.1007/s00253-018-8744-8 DO - 10.1007/s00253-018-8744-8 ID - Cabulong2018 ER - TY - JOUR AU - Cam, Y. AU - Alkim, C. AU - Trichez, D. AU - Trebosc, V. AU - Vax, A. AU - Bartolo, F. AU - Besse, P. AU - Francois, J. M. AU - Walther, T. PY - 2016 DA - 2016// TI - Engineering of a synthetic metabolic pathway for the assimilation of (d)-xylose into value-added chemicals JO - ACS Synth Biol. VL - 5 UR - https://doi.org/10.1021/acssynbio.5b00103 DO - 10.1021/acssynbio.5b00103 ID - Cam2016 ER -