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Fig. 2 | Biotechnology for Biofuels

Fig. 2

From: Targeting hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase for lignin modification in Brachypodium distachyon

Fig. 2

Phylogenetic tree of HCT enzymes in plants. Protein sequences were obtained from GenBank, with the accession numbers shown. Species are: Aegilops tauschii (Ata), Ananas comosus (Ac), Arabidopsis thaliana (Ath), Avena sativa (As), Bambusa emeiensis (Be), Brachypodium distachyon (Bd), Capsicum annuum (Ca), Cynara cardunculus (Cc), Dichanthelium oligosanthes (Do), Dorcoceras hygrometricum (Dh), Dryopteris fragrans (Df), Elaeis guineensis (Eg), Eucalyptus globulus (Egl), Eucalyptus grandis (Egr), Festuca rubra (Fr), Glycine max (Gm), Hordeum vulgare (Hv), Lactuca sativa (Ls), Medicago truncatula (Mt), Musa acuminata (Ma), Nicotiana attenuata (Na), Nicotiana sylvestris (Ns), Nicotiana tabacum (Nt), Nicotiana tomentosiformis (Nto), Oryza sativa (Os), Oryza brachyantha (Ob), Panicum hallii (Ph), Panicum virgatum (Pv), Phoenix dactylifera (Pd), Physcomitrella patens (Ppa), Populus euphratica (Pe), Populus tomentosa (Pto), Populus trichocarpa (Ptr), Prunus persica (Pp), Saccharum spontaneum (Ssp), Sesamum indicum (Sin), Setaria itálica (Si), Solanum tuberosum (St), Sorghum bicolor (Sb). Spinacia oleracea (So), Triticum aestivum (Ta), Triticum urartu (Tu), Zea mays (Zm). Monocots are shown in black, dicots in burnt orange and the outgroup used to root the tree in blue. The B. distachyon HCT enzymes targeted for genetic studies are shown in bold (BdHCT-1, Bradi5g14720; BdHCT-2, Bradi3g48530). The phylogenetic tree was built by PHYML plugin [39] using JTT substitution model and 1000 bootstraps replicates. Bootstrap support values are indicated at the nodes

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