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Table 1 Expression analysis of genes involved in carbon fixation

From: Molecular mechanism underlying the effect of maleic hydrazide treatment on starch accumulation in S. polyrrhiza 7498 fronds

Gene ID Encoding enzyme Control (FPKM) MH (FPKM) log2
Calvin cycle up-regulated
 Spo018324 Phosphoglycerate kinase [EC:2.7.2.3] 270.05 1145.74 2.09
 Spo008868 Glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] 560.72 7162.6 3.68
 Spo009781 Triosephosphate isomerase (TIM) [EC:5.3.1.1] 622.12 1452.24 1.23
 Spo013802 Ribose 5-phosphate isomerase A [EC:5.3.1.6] 31.02 186.69 2.59
 Spo013803 Ribose 5-phosphate isomerase A [EC:5.3.1.6] 64.84 153.62 1.25
 Spo010531 Ribulose-phosphate 3-epimerase [EC:5.1.3.1] 9.83 23.47 1.26
Calvin cycle down-regulated
 Spo005613 Ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] 66,706.15 12,760.87 − 2.37
 Spo007627 Ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] 1791.85 47.64 − 5.22
 Spo001888 Glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] 3102.79 638.01 − 2.26
 Spo002696 Fructose-1,6-bisphosphatase I [EC:3.1.3.11] 173.34 40.12 − 2.1
 Spo003791 Transketolase [EC:2.2.1.1] 573.47 171.25 − 1.73
 Spo005573 Ribulose-phosphate 3-epimerase [EC:5.1.3.1] 898.65 386.91 − 1.21
 Spo013568 Phosphoribulokinase [EC:2.7.1.19] 1232.06 189.38 − 2.69
C4 pathway up-regulated
 Spo007324 Phosphoenolpyruvate carboxylase [EC:4.1.1.31] 77.16 160.4 1.06
 Spo014243 Malate dehydrogenase [EC:1.1.1.37] 525.71 1729.25 1.72
 Spo000853 pyruvate, orthophosphate dikinase [EC:2.7.9.1] 86.3 204.32 1.25
 Spo007300 Aspartate aminotransferase, mitochondrial [EC:2.6.1.1] 8.56 24.17 1.5
 Spo001577 Alanine transaminase [EC:2.6.1.2] 79.38 986.71 3.64
 Spo014756 Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)[EC:1.1.1.40] /NADP-dependent malic enzyme isoform X1 71.18 140.96 1
 Spo018489 Phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] 162.96 2563.48 3.97
 Spo005444 Phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] 1.05 204.43 7.58
C4 pathway down-regulated
 Spo005743 Phosphoenolpyruvate carboxylase [EC:4.1.1.31] 304.59 137.98 − 1.14