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Table 1 Information on Zymomonas genomes

From: Zymomonas diversity and potential for biofuel production

Common

IMG.taxID

NCBI accession #

SRA accession #

Gene

count

Scaffold

count

hierBAPS

cluster

ANI_99

cluster

Genome reference

ZM4

2834884446

NZ_CP023715

 

2008

5

1

7

[5]

B-1960

2834983939

NZ_CP021053

 

1837

1

1

4: CP1

[6]

CP1

2811994965

NZ_VIVG01000001.1

SRP196443

1823

4

1

4: CP1

This study

CP3

2818991419

NZ_VIVT01000001.1

SRP196448

1670

22

1

2: CP4

This study

CP4

2545555880

NC_022900

 

1933

6

1

2: CP4

[7]

B-12526

2558860209

NZ_CP003709

 

1916

6

1

2: CP4

[3]

Z6

2634166410

NC_018145

 

1847

4

4

3: Z6

[8]

B-23394

2811994876

NZ_VFNW01000001.1

SRP196447

1869

4

4

3: Z6

This study

B-4492

2811994895

NZ_VFOD01000001.1

SRP196445

1873

5

4

3: Z6

This study

ATCC 10988

645058785

NZ_ACQU01000001

 

1894

24

2

1: Drainas

[9]

CU1

2811994958

NZ_VFOH01000001.1

SRP196503

1880

3

2

1: Drainas

This study

CU1rif2

2811994957

NZ_VIVF01000001.1

SRP196507

1896

4

2

1: Drainas

This study

uvs51

2811994963

NZ_VFOI01000001.1

SRP196501

1903

5

2

1: Drainas

This study

PROIMI A1

2811994956

NZ_VFOG01000001.1

SRP196506

1877

4

1

6

This study

NCIMB11163

646311969

NC_013355

 

1978

4

1

8

[10]

francensis

2811994955

NZ_VFOF01000001.1

SRP196505

1882

7

3

5

This study

pomaceae

650716107

NC_015709

 

1838

3

3

9

[11]

  1. Common strain names were used in the table and in the text. Other names used by different strain collections are listed in Additional file 1: Table S2 for cross-reference. For strains with multiple scaffolds, NCBI Acc # for the largest contig is shown; smaller contigs have consecutive numbers. Contigs recognized as plasmids are listed in Additional file 1: Table S3 with specific accession numbers. SRA accession numbers are provided for the genomes sequenced for this study