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Table 2 Steady-state kinetic constants (Km (μM), kcat (s −1), kcat/Km (M−1 s−1)) for the oxidation of ABTS, DMP and RB 19 by Il-DyP4 and the W variants

From: Revealing two important tryptophan residues with completely different roles in a dye-decolorizing peroxidase from Irpex lacteus F17

 

Kinetic constantsa

Il-DyP4c

W109Fc

W147Fc

W212Fc

W264Fc

W380Fc

ABTS

Km

67.29 + 13.05

66.44 ± 3.32

63.21 ± 12.86

71.48 ± 10.52

71.87 ± 20.86

752.00 ± 207.21

kcat

790.00 ± 56.06

602.50 ± 11.00

786.70 ± 57.42

665.10 ± 36.90

384.85 ± 42.27

316.16 ± 61.61

kcat/Km

(1.17 ± 0.43) × 107

(9.03 ± 3.31) × 106

(1.25 ± 0.45) × 107

(9.30 ± 3.51) × 106

(5.35 ± 2.02) × 106

(4.20 ± 2.90) × 105

DMP

Km

8.98 ± 1.02

172.71 ± 38.31

69.19 ± 10.56

86.67 ± 12.98

229.05 ± 30.79

b

kcat

58.99 ± 0.45

69.65 ± 3.46

72.66 ± 1.74

63.75 ± 1.62

71.21 ± 2.60

b

kcat/Km

(6.57 ± 0.44) × 106

(4.03 ± 0.90) × 105

(1.05 ± 0.16) × 106

(7.3 ± 1.25) × 105

(3.11 ± 0.84) × 105

b

RB 19

Km

139.87 ± 42.85

86.88 ± 12.28

97.59 ± 24.50

74.04 ± 14.38

27.60 ± 7.70

b

kcat

187.90 ± 37.00

112.63 ± 10.15

148.99 ± 21.92

108.79 ± 11.16

46.11 ± 5.91

b

kcat/Km

(1.34 ± 0.86) × 106

(1.30 ± 0.83) × 106

(1.53 ± 0.89) × 106

(1.47 ± 0.78) × 106

(1.67 ± 0.76) × 106

b

  1. aAll data were fitted using the hyperbola function by Origin
  2. bNot calculated because of a lack of enzymatic activity
  3. cSubstrate oxidation was measured at pH 3.5 (10 mM sodium tartrate buffer) using 3.3 nM of enzyme concentration obtained from a molar extinction coefficient