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Table 2 List of 49 significantly differentially expressed genes between ZM4 cultured at 30 °C and 45 °C

From: Investigation of the impact of a broad range of temperatures on the physiological and transcriptional profiles of Zymomonas mobilis ZM4 for high-temperature-tolerant recombinant strain development

Gene ID

Product

Ratio

− log10 (P-value)

Upregulated gene in ZM4 cultured at 30 °C compared with 45 °C

 ZMO0005

Sulfate adenylyltransferase small subunit

1.35

3.24

 ZMO0008

Sulfite reductase hemoprotein beta-component

1.31

2.59

 ZMO0374

Levansucrase

1.83

5.90

 ZMO0375

Levansucrase/invertase

1.64

5.43

 ZMO0379

PBSX family phage terminase large subunit

1.53

5.18

 ZMO0395

Hypothetical protein

2.20

5.52

 ZMO0397

Hypothetical protein

1.84

4.79

 ZMO0454

Formate-tetrahydrofolate ligase

2.39

10.71

 ZMO0492

Nitrogen regulatory protein PII

3.16

11.78

 ZMO1117

Glutamate synthase large subunit

1.44

7.99

 ZMO1719

Fructokinase

1.73

10.52

 ZMO1748

ArsR family transcriptional regulator

1.36

5.73

 ZMOp36x011

Tail sheath protein

1.82

4.51

 ZMOp36x012

Tail tube protein

1.60

4.35

Downregulated gene in ZM4 cultured at 30 °C compared with 45 °C

 ZMO0122

Uncharacterized protein

− 2.86

9.99

 ZMO0286

DUF541 domain-containing protein

− 2.56

9.78

 ZMO0693

OsmC family protein

− 1.57

8.5

 ZMO0740

General stress protein CsbD

− 3.06

8.03

 ZMO1113

FAD-dependent pyridine nucleotide-disulfide oxidoreductase

− 1.62

8.34

 ZMO1237

Lactate dehydrogenase

− 2.82

9.39

 ZMO1522

TonB-dependent receptor

− 1.01

3.88

 ZMO1533

Hypothetical protein

− 3.01

12.07

 ZMO1754

Succinate-semialdehyde dehydrogenase SSADH

− 3.95

11.33

 ZMO1776

Aminopeptidase N

− 1.97

9.64

 ZMO1940

Hypothetical protein

− 4.87

7.45

 ZMO0003

Adenylyl-sulfate kinase

− 1.23

2.12

 ZMO0246

ATP-dependent protease subunit HslV

− 2.06

11.16

 ZMO0400

Hypothetical protein

− 1.17

5.94

 ZMO0422

BadM/Rrf2 family transcriptional regulator

− 1.25

7.82

 ZMO0660

Chaperone protein DnaK

− 3.52

10.65

 ZMO0748

Cysteine synthase

− 3.3

9.68

 ZMO0989

Heat-shock protein IbpA

− 8.63

15.44

 ZMO1062

Putative phage shock protein pspD

− 2.33

8.1

 ZMO1063

Phage shock protein A PspA

− 2.9

10.94

 ZMO1271

Siroheme synthase CysG

− 4.29

11.34

 ZMO1424

ATP-dependent chaperone ClpB

− 1.82

11.22

 ZMO1426

DNA repair protein RadC

− 1.22

6.63

 ZMO1463

TonB-dependent receptor

− 1.41

4.44

 ZMO1586

Bacterioferritin

− 1.46

5.72

 ZMO1721

Glyoxalase/bleomycin resistance protein dioxygenase

− 4.59

13.11

 ZMO1849

Uncharacterized protein

− 3.55

8.15

 ZMO1928

Chaperonin Cpn10

− 6.22

13.21

 ZMO1929

Chaperonin GroEL

− 6.03

12.81

 ZMOp33x029

Azospirillum phage Cd Gp10 family protein

− 2.4

7.07

 ZMOp33x030

Hypothetical protein

− 2.45

8.57

 ZMOp39x009

Putative partitioning protein ParA ATPase

− 1.39

8.45

 ZMOp39x010

Putative partitioning protein ParB

− 1.23

6.27

 ZMOp39x036

Hypothetical protein

− 3.79

12.36

 ZMOp39x037

Hypothetical protein

− 4.21

11.34

  1. Ratio is the log2-based expression difference between ZM4 cultured at 30 °C and 45 °C. Gene name with red and blue color font indicates up-regulated and down-regulated at 30 °C compared with 45 °C, respectively. Eleven genes shown in bold font were up-regulated in both high (45 °C) and low temperature (24 °C) conditions than at normal temperatures (30 °C) (Additional file 3: Table S3)