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Table 1 Online databases for sorghum genome

From: SorGSD: updating and expanding the sorghum genome science database with new contents and tools

Name

URL/description

PubMed ID

Comprehensive genome databases and analysis platforms

 Phytozome

https://phytozome.jgi.doe.gov/

[18]

Plant genome database portal and analysis platform

22110026

 Gramene

http://www.gramene.org/

[19]

Plant genome database portal and analysis platform

33170273

 GOLD

https://gold.jgi.doe.gov/

[20]

Genomes online database

33152092

Sorghum included plant secondary databases

 PIGD

http://pigd.ahau.edu.cn/

[21]

A database for intronless genes in Poaceae

25270086

 PlantTFDB

http://planttfdb.gao-lab.org/

[22]

A database of plant transcription factors

27924042

 DNApod

http://tga.nig.ac.jp/dnapode

[23]

DNA polymorphism annotation database

28234924

 PceRBase

http://bis.zju.edu.cn/pcernadb/

[24]

A database of plant competing endogenous RNA

28053167

 PtRFdb

http://www.nipgr.res.in/PtRFdb

[25]

A database for plant tRNA-derived fragments

29939244

 GreenPhylDB

https://www.greenphyl.org/

[26]

A comparative pangenomic database for plant genomes

33237299

Sorghum specific secondary databases

 MOROKOSHI

http://sorghum.riken.jp/

[27]

Sorghum transcriptome database

25505007

 SorGSD

http://sorgsd.big.ac.cn/

[31]

Sorghum SNP database

26884811

 PGSB

http://pgsb.helmholtz-muenchen.de/plant/sorghum/

[28]

Plant genome and systems biology

26527721

 SorghumFDB

http://structuralbiology.cau.edu.cn/sorghum/

[29]

A database for sorghum functional genomics

27352859

 Sorghum QTL Atlas

https://aussorgm.org.au/sorghum-qtl-atlas/

[30]

Tool for searching QTL landscape in sorghum

30343386

 Sorghum genomics

https://www.purdue.edu/sorghumgenomics/

N/A

Functional Gene Discovery Platform for Sorghum