Table 2 Distribution of variations in different genomic regions
From: SorGSD: updating and expanding the sorghum genome science database with new contents and tools
Consequence type | SNPs | Small INDELs |
|---|---|---|
Intergenic | 20,683,922 | 2,248,312 |
Upstream | 12,974,750 | 4,145,728 |
Downstream | 11,903,259 | 3,904,589 |
Intron | 4,263,151 | 1,386,417 |
5′ UTR | 4,89,036 | 2,72,597 |
3′ UTR | 8,05,777 | 3,13,469 |
Missense | 7,84,695 | – |
Synonymous | 6,67,205 | – |
Splice region | 1,00,793 | 33,979 |
Start lost | 2152 | 849 |
Stop lost | 1813 | 722 |
Stop gained | 16,102 | 4730 |
Stop retained | 1002 | 409 |
Splice acceptor | 4160 | 3292 |
Splice donor | 3686 | 3858 |
Coding sequence | 89 | 4480 |
Inframe deletion | – | 52,218 |
Inframe insertion | – | 41,617 |
Frameshift | – | 1,04,763 |
Protein altering | – | 3656 |