Skip to main content

Table 2 Distribution of variations in different genomic regions

From: SorGSD: updating and expanding the sorghum genome science database with new contents and tools

Consequence type SNPs Small INDELs
Intergenic 20,683,922 2,248,312
Upstream 12,974,750 4,145,728
Downstream 11,903,259 3,904,589
Intron 4,263,151 1,386,417
5′ UTR 4,89,036 2,72,597
3′ UTR 8,05,777 3,13,469
Missense 7,84,695
Synonymous 6,67,205
Splice region 1,00,793 33,979
Start lost 2152 849
Stop lost 1813 722
Stop gained 16,102 4730
Stop retained 1002 409
Splice acceptor 4160 3292
Splice donor 3686 3858
Coding sequence 89 4480
Inframe deletion 52,218
Inframe insertion 41,617
Frameshift 1,04,763
Protein altering 3656