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Table 1 Most significantly differentially expressed transcripts between timepoints T1 and T2 with reaction associations in iDU1327

From: Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate

Transcript ID

Effect

Log2FC

Associated reactions in iDU1327

Names of associated reactions

Aspni_transcript.chr_202G213.1

Down-regulated

− 9.7

R462; R463; N1; R464

Catalase

Aspni_transcript.chr_202G683.1

Down-regulated

− 8.9

R623

5-Oxo-l-proline amidohydrolase (ATP-hydrolysing)

Aspni_transcript.chr_401G28.1

Down-regulated

− 8.1

R258; R259

Glucose oxidase

Aspni_transcript.chr_701G586.1

Down-regulated

− 6.4

R1227

Sulphite reductase

Aspni_transcript.chr_202G195.1

Down-regulated

− 6.1

R462; R463; N1; R464

Catalase

Aspni_transcript.chr_101G17.1

Down-regulated

− 5.5

R332; R333; R334

Alpha-galactosidase

Aspni_transcript.chr_304G54.1

Down-regulated

− 5

R74; R511

Formate oxidase; Phosphoglycerate dehydrogenase

Aspni_transcript.chr_302G484.1

Down-regulated

− 4.8

R305; R335; NR2

Fructan beta-fructosidase; Invertase; Stachyose fructohydrolase

Aspni_transcript.chr_301G287.1

Down-regulated

− 4.5

R477; R485; R1246

Argininosuccinate synthase; L-alanine:tRNA(Ala) ligase

Aspni_transcript.chr_101G512.1

Down-regulated

− 4.4

R417; R418

Chitinase

Aspni_transcript.chr_604G19.1

Up-regulated

10.8

R89; R90; R95; R96; R97; R98

Propanoate:CoA ligase (AMP-forming); Propionyl-CoA synthetase

Aspni_transcript.chr_402G104.3

Up-regulated

8.4

R377

Salicylate hydroxylase

Aspni_transcript.chr_202G947.1

Up-regulated

8.4

R35

Citrate synthase

Aspni_transcript.chr_601G472.1

Up-regulated

8.1

R398

4-Carboxymuconolactone decarboxylase

Aspni_transcript.chr_604G21.1

Up-regulated

8

R124; R131

Dihydrofolate synthase; Tetrahydrofolylpolyglutamate synthase

Aspni_transcript.chr_601G138.1

Up-regulated

7.4

R490

Acetylglutamate kinase

Aspni_transcript.chr_601G143.1

Up-regulated

7.2

R1187

Trans, trans-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase

Aspni_transcript.chr_402G104.6

Up-regulated

7.1

R377

Salicylate hydroxylase

Aspni_transcript.chr_503G231.2

Up-regulated

7

R411

Glucosamine-6-phosphate deaminase

Aspni_transcript.chr_603G120.1

Up-regulated

6.9

R791; R796; R801; R806; R811; R816; R821; R826; R831; R837; R842; R847; R852; R857; R862; R867; R872

3-Oxoacyl-[acyl-carrier-protein] reductase

  1. Transcripts shown have q value < 1E−40 and are ranked by log2FC