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Table 2 Most significantly differentially expressed transcripts between timepoints T1 and T3 with reaction associations in iDU1327

From: Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate

Transcript ID

Effect

Log2FC

Associated reactions in iDU1327

Names of associated reactions

Aspni_transcript.chr_601G340.1

Down-regulated

− 11.5

R544; R554

Dihydroxy acid dehydratase

Aspni_transcript.chr_202G213.1

Down-regulated

− 10.7

R462; R463; N1; R464

Catalase

Aspni_transcript.chr_202G683.1

Down-regulated

− 10.7

R623

5-Oxo-l-proline amidohydrolase (ATP-hydrolysing)

Aspni_transcript.chr_102G681.1

Down-regulated

− 10.6

R462; R463; N1; R464

Catalase

Aspni_transcript.chr_401G28.1

Down-regulated

− 9.3

R258; R259

Glucose oxidase

Aspni_transcript.chr_801G200.1

Down-regulated

− 8.8

R790; R795; R800; R805; R810; R815; R820; R825; R830; R836; R841; R846; R851; R856; R861; R866; R871

3-Oxoacyl-[acyl-carrier-protein] synthase

Aspni_transcript.chr_701G586.1

Down-regulated

− 7.4

R1227

Sulphite reductase

Aspni_transcript.chr_603G16.1

Down-regulated

− 6.9

R451

ATP synthase

Aspni_transcript.chr_302G588.1

Down-regulated

− 6.9

R719

Uracil phosphoribosyltransferase

Aspni_transcript.chr_202G195.1

Down-regulated

− 6.5

R462; R463; N1; R464

Catalase

Aspni_transcript.chr_402G104.3

Up-regulated

9.5

R377

Salicylate hydroxylase

Aspni_transcript.chr_601G472.1

Up-regulated

9.4

R398

4-Carboxymuconolactone decarboxylase

Aspni_transcript.chr_202G1357.1

Up-regulated

8.3

R362; R618; R619; R785; R1244; NR28; NR37

Benzonitrilase; Nitrilase; Formamide hydro-lyase; Phenylacetonitrile aminohydrolase

Aspni_transcript.chr_601G138.1

Up-regulated

8

R490

Acetylglutamate kinase

Aspni_transcript.chr_402G104.6

Up-regulated

7.7

R377

Salicylate hydroxylase

Aspni_transcript.chr_601G80.1

Up-regulated

7.6

R65; R66

Oxalate decarboxylase

Aspni_transcript.chr_601G143.1

Up-regulated

7.6

R1187

Trans,trans-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase

Aspni_transcript.chr_401G532.1

Up-regulated

7.5

R378; R402; R404; R615; NR23

Amine oxidase

Aspni_transcript.chr_503G231.2

Up-regulated

7.4

R411

Glucosamine-6-phosphate deaminase

Aspni_transcript.chr_304G666.1

Up-regulated

7.2

R211; R1115

Glycerol 3-phosphate dehydrogenase (NAD + dependent)

  1. Transcripts shown have q value < 1E−40 and are ranked by log2FC