Table 9 Mapping files used in functional annotation of transcripts

ec2go

http://current.geneontology.org/ontology/external2go/ec2go

2020/06/01

[49]

pfam2go

http://geneontology.org/external2go/pfam2go

2020/04/18

[50]

prosite2go

http://current.geneontology.org/ontology/external2go/prosite2go

2020/04/18

[50]

smart2go

http://current.geneontology.org/ontology/external2go/smart2go

2020/04/18

[50]

hamap2go

http://current.geneontology.org/ontology/external2go/hamap2go

2020/04/18

[51]

rhea2kegg_reaction.tsv

https://ftp.expasy.org/databases/rhea/tsv/rhea2kegg_reaction.tsv

2020/07/10

[52]

TIGRFAMS_GO_LINK

ftp://ftp.jcvi.org/pub/data/TIGRFAMs/

2014/09/17

[41]

TIGRFAMs Complete Listing

http://tigrfams.jcvi.org/cgi-bin/Listing.cgi

2014/09/17

[41]

ko2cog.xl

https://www.genome.jp/kegg/files/ko2cog.xl

2020/07/02

[53]

ko2go.xl

https://www.genome.jp/kegg/files/ko2go.xl

2020/07/02

[53]

ko2tc.xl

https://www.genome.jp/kegg/files/ko2tc.xl

2020/07/10

[53]