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Table 1 Strains and plasmids

From: The pyruvate decarboxylase activity of IpdC is a limitation for isobutanol production by Klebsiella pneumoniae

Strains or plasmids

Relevant genotype and description

References

K. pneumoniae strains

 CGMCC 1.6366

TUAC01 Wild type

[12]

 ΔbudA–ΔldhA–ipdC

ΔbudA, ΔldhA, pDK6-ipdC

This work

 ΔbudA–ΔldhA–kivD

ΔbudA, ΔldhA, pDK6-kivD

This work

 IpdC

ΔbudA, ΔldhA, ΔipdC, pDK6-ipdC

[18]

 KivD

ΔbudA, ΔldhA, ΔipdC, pDK6-kivD

This work

 T290L

ΔbudA, ΔldhA, ΔipdC, pDK6-ipdC-T290L

This work

 L546W

ΔbudA, ΔldhA, ΔipdC, pDK6-ipdC-L546W

This work

E. coli strains

 E. coli DH5α

Host of plasmid

Lab stock

 BL21(DE3)

Host of plasmid

Lab stock

 BL21/ipdC

Carries pET28a-ipdC

This work

 BL21/kivD

Carries pET28a-kivD

This work

 BL21/D289L

Carries pET28a-ipdC-D289L

This work

 BL21/T290L

Carries pET28a-ipdC-T290L

This work

 BL21/Q383M

Carries pET28a-ipdC-Q383M

This work

 BL21/A387I

Carries pET28a-ipdC-A387I

This work

 BL21/F388W

Carries pET28a-ipdC-F388W

This work

 BL21/A387L

Carries pET28a-ipdC-A387L

This work

 BL21/V542I

Carries pET28a-ipdC-V542I

This work

 BL21/L546W

Carries pET28a-ipdC-L546W

This work

 BL21/D289L + T290L

Carries pET28a-ipdC-D289L + T290L

This work

 BL21/A387I + F388W

Carries pET28a-ipdC-A387I + F388W

This work

Plasmids

 pDK6

Kanr, lacIQ, tac, 5.1 kb

[19]

 pDK6-kivD

pDK6 carries kivD

[18]

 pDK6-ipdC

pDK6 carries ipdC

[18]

 pET28a

Vector carries N-terminal His Tag, Kanr, 5369 bp

Novagen®

 pGEM-kivD

Vector holding kivD (L. lactis)

[20]

 pMD18-T-ipdC

Ampr, carries ipdC

[18]

 pET28a-kivD

pET28a carries kivD

This work

 pET28a-ipdC

pET28a carries ipdC

This work