Table 1 Comparison of different GEMs for different Clostridia
From: Model-based driving mechanism analysis for butyric acid production in Clostridium tyrobutyricum
Strain | C. cellulolyticum | C. beijerinckii | C. acetobutylicum | C. thermocellum | C. kluyveri | C. ljungdahlii | C. tyrobutyricum |
|---|---|---|---|---|---|---|---|
Total genome sizea (Mb) | 4.1 | 6.0 | 4.1 | 3.8 | 4.5 | 4.6 | 3.1 |
Open reading frames (ORFs) | 3488 | 5100 | 3748 | 3236 | 4422 | 4358 | 3180 |
Genome-scale model | iFS431 | iCM925 | iCac967 | iCth446 | iCKL708 | iHN637 | iCT583 |
Genes | 431 | 925 | 967 | 446 | 708 | 637 | 583 |
Reactions | 621 | 938 | 1231 | 660 | 994 | 785 | 858 |
Metabolites | 603 | 881 | 1058 | 599 | 804 | 698 | 798 |
ORF coverage (%) | 12.4 | 18.1 | 25.8 | 13.8 | 16.0 | 16.0 | 18.3 |
Reference | [45] | [23] | [46] | [47] | [48] | [49] | This study |