Table 4 Main genes responsible for lignin degradation in DF3-3
Gene ID | Size (aa) | Gene name | Encode protein | Species of reference gene | Accession No. (NCBI) | BLAST identity (%) |
|---|---|---|---|---|---|---|
gene 0557 | 599 | ubiX | Aromatic acid decarboxylase | Streptomyces sp. 4F | ALV54514.1 | 97.99 |
gene 0904 | 1400 | YhjG | Pentachlorophenol monooxygenase | Streptomyces sp. 4F | ALV51870.1 | 95.49 |
gene 1050 | 533 | ahpD | Alkyl hydroperoxide reductase | Actinospica acidiphila | WP_163089316.1 | 99.44 |
gene 1234 | 1451 | katE | Catalase | Streptomyces sp. UNC401CLCol | WP_028959332.1 | 99.79 |
gene 2609 | 989 | – | Multicopper oxidase domain-containing protein | Streptomyces sp. XHT-2 | WP_161108161.1 | 99.39 |
gene 2768 | 1091 | – | Aryl-alcohol dehydrogenase | Streptomyces sp. di50b | SCD35921.1 | 93.66 |
gene 2849 | 962 | pdxA | Terephthalate dihydrodiol dehydrogenase | Streptomyces sp. McG7 | WP_215047915.1 | 98.75 |
gene 2857 | 983 | – | Phenoxybenzoate dioxygenase | Streptomyces tuirus | WP_190903372.1 | 88.07 |
gene 2915 | 2288 | copA | Carbonate dehydratase | Actinospica acidiphila | WP_058917537.1 | 96.19 |
gene 3045 | 383 | – | Extradiol dioxygenase | Streptomyces sp. 4F | ALV53653.1 | 93.70 |
gene 3220 | 2276 | katE | Catalase HPII | Streptomyces sp. XHT-2 | WP_161108660.1 | 99.74 |
gene 3600 | 1502 | – | 2-Polyprenyl-6-methoxyphenol hydroxylase | Streptomyces sp. di50b | SCD47389.1 | 85.06 |
gene 3744 | 959 | – | Pimeloyl-ACP methyl ester carboxylesterase | Streptomyces sp. di188 | SCD58877.1 | 88.43 |
gene 3898 | 2225 | katG | Catalase-peroxidase | Streptomyces sp. Akac8 | WP_136237873.1 | 99.87 |
gene 3899 | 380 | fur | Transcriptional repressor | Streptomyces sp. UNC401CLCol | WP_028958816.1 | 99.21 |
gene 3983 | 1655 | katE | Catalase | Streptomyces sp. GESEQ-13 | WP_210638384.1 | 99.09 |
gene 4491 | 197 | – | Multicopper oxidase domain-containing protein | unclassified Streptomyces | WP_106959434.1 | 98.46 |
gene 5116 | 1529 | aldH | Aldehyde dehydrogenase | Streptomyces sp. XHT-2 | MXQ60577.1 | 99.61 |
gene 5348 | 716 | yfiH | LACCASE | Streptomyces griseorubens | GGQ64023.1 | 96.64 |
gene 5542 | 1025 | – | Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase | Streptomyces afghaniensis 772 | EPJ42281.1 | 82.27 |
gene 5998 | 2267 | copA | Carbonate dehydratase | Streptomyces sp. UNC401CLCol | WP_028959238.1 | 99.74 |
gene 6181 | 1415 | glcD | FAD-linked oxidase | Actinospica acidiphila | NEC50278.1 | 98.73 |
gene 6937 | 1277 | – | Dye-decolorizing peroxidase | Streptomyces pharetrae CZA14 | OSZ61955.1 | 83.61 |