Candidate gene for metabolites and lipids | Quantitative trait locus mapping | Comparative genomics analysis | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
mQTL cluster | Chr | Markers associated | Effect | LOD score | r2 (%) | Metabolite class | Metabolites and lipids | Gene-name 1.1 | Arabidopsis homologs | KEGG pathway | References | ||
GmPHS | Known | mQTL-C6 | 8 | Marker706158, Marker750703 | − 0.97~ 0.52 | 3.14~3.63 | 2.48~8.16 | Carbohydrates | d-Glucose | Glyma08g45210 | AT3G46970 | gmx00500 | Satoh et al. [69] |
GmFPBP | New | mQTL-C4 | 7 | Marker399016, Marker384918 | − 0.72~0.69 | 2.60~2.82 | 7.33~7.40 | Mannose | Glyma07g17180 | AT3G54050 | gmx00051 | Strand et al. [109] | |
GmFBA | Known | mQTL-C11 | 13 | Marker2849746, Marker2767659 | 0.45~ 0.76 | 2.56~2.74 | 3.06~3.14 | Mannose, d-fructose 2,6-bisphosphate | Glyma13g21540 | AT2G36460 | gmx00051 | Carrera et al. [110] | |
GmZF351 | Known | mQTL-F17 | 6 | Marker1996457, Marker2044143 | 0.27~ 0.35 | 2.59~3.25 | 3.47~4.34 | Fatty acids | FA(18:0), FA(20:0), FA(22:1) | Glyma06g44440 | AT1G03790 | Â | Li et al. [25] |
GmPLDγ | Known | mQTL-G115 | 1 | Marker1801142, Marker1822692 | − 0.44~ 0.46 | 2.62~4.71 | 5.92~10.87 | Glycerolipids | DG(16:0/16:0), DG(20:0/18:2), DG(20:0/18:3), TG(18:1/18:2/18:3), DG(18:0/16:0), DG(18:0/18:0), DG(18:1/18:1) | Glyma01g42420 | AT2G42010 | gmx04144 | Bai et al. [16] |
GmPLDε1 | Known | mQTL-G109 | 15 | Marker29446, Marker5035 | − 0.27~ 0.26 | 2.56~5.36 | 0.24~5.73 | DG(16:0/16:0), DG(18:0/16:0), DG(18:0/18:0), DG(18:3/18:3) | Glyma15g02710 | AT1G55180 | gmx04144 | Yang et al. [59] | |
GmPECT1 | Known | mQTL-G21 | 18 | Marker920733, Marker926627 | − 0.45~ 0.41 | 2.72~4.45 | 5.97~11.39 | DG(18:0/18:1), DG(16:0/18:1), DG(18:1/18:1), DG(18:0/18:0), DG(16:0/16:0) | Glyma18g45210 | AT2G38670 | gmx00564 | Mizoi et al. [111] | |
GmnsPLC | New | mQTL-G40 | 3 | Marker2485779, Marker2406610 | − 0.21~ 1.44 | 3.24~31.92 | 3.49~10.22 | DGDG(16:0/18:2) | Glyma03g22860 | AT3G03520 | gmx00564 | Cai et al.[15] | |
GmDREBL | New | mQTL-G94 | 12 | Marker2668097, Marker2705284 | − 0.12~ 0.05 | 3.07~4.57 | 0.46~3.16 | DG(20:1/18:2), TG(18:0/16:0/18:1), DG(18:3/18:3), LPC(16:0), LPC(18:0) | Glyma12g11150 | AT2G40340 |  | Zhang et al. [24] | |
GmLPAAT4 | Known | mQTL-G9 | 17 | Marker182106, Marker181452 | − 0.23~ 0.22 | 2.51~5.41 | 0.10~11.01 | TG(16:0/16:0/18:2), DG(18:2/18:2), TG(16:0/18:2/18:3), TG(16:0/16:0/18:1), TG(16:0/18:1/18:1), TG(18:3/18:2/18:2), TG(18:1/18:2/18:2), TG(18:0/16:0/18:1), TG(20:0/18:1/18:2), TG(16:0/16:0/18:3) | Glyma17g36670 | AT1G75020 | gmx00561 | Kim et al. [112] | |
GmDGAT1a | Known | mQTL-G100 | 13 | Marker2790748, Marker2850221 | − 0.39~ 0.32 | 2.83~5.40 | 0.02~10.08 | TG(16:0/18:2/18:3), TG(20:1/18:3/18:3), TG(18:3/18:3/18:3), TG(20:2/18:2/18:2) | Glyma13g16560 | AT2G19450 | gmx00561 | Torabi et al. [10] | |
GmbZIP123 | Known | mQTL-G51 | 6 | Marker1991901, Marker1969292 | − 0.33~ 0.22 | 2.62~4.27 | 1.46~8.53 | TG(18:1/18:1/18:2), TG(20:1/18:1/18:2), TG(16:0/18:1/18:2), SQDG(16:0/18:2) | Glyma06g01240 | AT4G34590 |  | Song et al. [22] | |
GmSWEET10a | Known | mQTL-G112 | 15 | Marker107799, Marker23766 | − 0.19~ 0.39 | 2.81~17.32 | 0.10~6.87 | DG(16:0/18:1), DG(16:0/18:2), DG(18:1/18:2), DG(20:1/18:2), TG(18:1/18:2/18:3) | Glyma15g05470 | AT5G13170 | gmx00500 | Wang et al. [5] | |
GmCK | Known | mQTL-G33 | 20 | Marker1374027, Marker1406581 | − 2.96~ 1.16 | 2.58~7.15 | 1.44~7.58 | Glycerophospholipids | PC(16:0/18:3), PE(16:0/18:3), PE(18:3/18:2), PE(18:3/18:3), PE(20:0/18:3) | Glyma20g31030 | AT1G74320 | gmx00564 | Lin et al. [113] |
GmDof11 | Known | mQTL-GP54 | 13 | Marker2818991, Marker2827481 | − 1.08~1.02 | 2.53~3.34 | 0.22~10.26 | PE(16:0/18:1), PE(16:0/18:2), PE(16:0/18:3), PE(18:3/18:2) | Glyma13g40420 | AT5G60200 |  | Wang et al. [26] | |
GmFBA | New | mQTL-O25 | 14 | Marker1738741, Marker1763128 | − 0.43~0.45 | 2.82~4.05 | 2.70~3.80 | Organic acid | d-Glyceric acid | Glyma14g36850 | AT2G36460 | gmx01230 | Carrera et al. [110] |
GmMDH1 | Known | mQTL-O19 | 13 | Marker2842700, Marker2759137 | − 0.90~0.94 | 2.57~3.68 | 4.93~9.05 | Isocitric acid, oxalic acid, succinic acid, citric acid | Glyma13g16440 | AT1G04410 | gmx00020 | Kong et al. [19] | |
GmGLYK | New | mQTL-O26 | 15 | Marker114116, Marker114116 | 0.36 | 3.17 | 1.35 | l-Malic acid | Glyma15g01540 | AT1G80380 | gmx00260 | Usuda and Edwards [114] | |
GmHXK | New | mQTL-O30 | 17 | Marker169306, Marker169306 | 1.34 | 2.58 | 6.82 | Oxalacetic acid | Glyma17g37720 | AT1G47840 | gmx00500 | Troncoso-Ponce et al. [115] | |
GmAAPT | New | mQTL-O2 | 2 | Marker1193792, Marker1193792 | − 0.91~ − 0.70 | 4.32~6.56 | 4.85~7.30 | Pyruvate | Glyma02g14211 | AT1G13560 | gmx00564 | Bai et al. [16] | |
GmFUM | Known | mQTL-O14 | 9 | Marker429142, Marker482975 | − 0.54~ − 0.37 | 2.88~3.94 | 1.74~3.17 | Pyruvate | Glyma10g02040 | AT2G47510 | gmx00020 | Behal and Oliver [116] | |
GmGAD | New | mQTL-O5 | 5 | Marker2187077, Marker2178818 | − 0.62~ 0.54 | 2.58~5.18 | 2.49~4.45 | Succinic acid | Glyma05g26660 | AT2G02010 | gmx00250 | Matsuyama et al. [117] | |
GmALDH2 | New | mQTL-P8 | 6 | Marker1993733, Marker2000797 | − 0.55~ − 0.32 | 2.87~4.51 | 3.06~5.77 | Amino acid | beta-Alanine | Glyma06g12010 | AT1G44170 | gmx00410 | Shin et al. [118] |
GmSD | Known | mQTL-P21 | 15 | Marker12570, Marker12570 | − 0.77~0.68 | 2.87~4.55 | 2.24~4.15 | Ethanolamine | Glyma15g05630 | AT1G43710 | gmx00340 | Yunus et al. [119] | |
GmFUS3 | New | mQTL-P22 | 16 | Marker2528893, Marker2589580 | − 0.77~ − 0.50 | 3.97~4.10 | 1.94~8.71 | Ethanolamine, isoleucine | Glyma16g05480 | AT3G26790 |  | Zhang et al. [24] | |
GmPK | New | mQTL-P26 | 20 | Marker1324457, Marker1324457 | − 0.40~ − 0.39 | 3.14~3.14 | 1.21~1.29 | Leucine | Glyma20g02980 | AT5G56350 | gmx00620 | Andre et al. [6] | |
GmGCL | New | mQTL-P1 | 1 | Marker1898999, Marker1898999 | − 0.74~ 0.70 | 4.05~6.02 | 2.62~4.38 | Serine | Glyma01g42900 | AT4G23100 | gmx00270 | Franklin et al. [120] | |
GmSTYK | Known | mQTL-P3 | 2 | Marker1188545, Marker1243816 | − 1.15~− 0.70 | 2.67~2.81 | 3.08~9.01 | Threonine | Glyma02g43650 | AT4G08850 |  | Ramachandiran et al. [76] |