Table 4 Thirty-eight genetic sub-networks that were partly validated by previous molecular biology studies
Subnetworks constructed in this study | Evidences from previous studies | Subnetworks constructed in this study | Evidences from previous studies | ||||||
|---|---|---|---|---|---|---|---|---|---|
No.a | Class | Knownb | Sub-network | No.a | Class | Knownb | Sub-network | ||
3 | 3D-I | New | Oil content (T)-GmDHLAT-DG(18:0/18:0) | GPDH-oil content [9] | 60 | 4D-II | New | DG(18:0/16:0) -GmPLDγ-GmARF16-miR160b-linolenic acid (T) | GmPLDγ-oil content [16] |
4 | 3D-I | New | Oil content (T)-GmDHLAT-DG(16:0/16:0) | GPDH-oil content [9] | 61 | 4D-II | New | DG(16:0/16:0) -GmPLDγ-GmARF16-miR160b-linolenic acid (T) | GmPLDγ-oil content [16] |
7 | 3D-I | Known | Linolenic acid (T)-GmCK-PC(16:0/18:3) | CK-PC [72] | 62 | 4D-II | New | DG(18:0/18:0) -GmPLDγ-GmARF16-miR160b-linolenic acid (T) | GmPLDγ-oil content [16] |
11 | 3D-I | New | Oleic acid (T)-GmPHS-d-glucose | GmPHS-d-glucose [69] | 64 | 4D-II | Known | Oleic acid (T) -GmPLDα1-GmARF8a-miR167d-PI(16:0/18:2) | GmPLDα1-oleic acid [13] |
19 | 3D-II | New | Stearic acid (T)-GmMDH1-succinic acid-GmDGAT1a | 65 | 4D-II | Known | FA(18:0)-GmABI4-GmARF8a-miR167b-oil content (T) | ||
20 | 3D-II | New | Stearic acid (T)-GmMDH1-citric acid-GmDGAT1a | 78 | 4D-II | New | Palmitic acid (T)-GmPLDα1-GmGAMYB1-miR159a-pyruvate | GmPLDα1-oleic acid [13] | |
22 | 3D-II | New | Palmitic acids (T)-GmSPT-oleic acid-GmHAD | AtHAD-fatty acids [121] | 84 | 4D-II | Known | TG(16:0/18:1/18:2)-GmbZIP123-GmHD-ZIPIII-10-miR166s-oil content (T) | |
24 | 3D-II | Known | Linolenic acid (T)-GmKASI-TG(18:1/18:2/18:3)-GmKAR | AtKAS-fatty acids [121] | 86 | 4D-II | Known | TG(18:1/18:1/18:3)-GmTAGL-GmHD-ZIPIII-10-miR166s-oil content (T) | miR166-HD-ZIPIII10 [67] |
35 | 3D-III | Known | Oil content (T)-GmDHLAT-GmFUM-Pyruvate | GPDH-palmitic acid [9] | 90 | 4D-II | Known | TG(18:3/18:2/18:2)-GmFatB1-GmHD-ZIPIII-10-miR166f-oleic acid (T) | |
37 | 3D-III | Known | Oleic acid (T)-GmSEI-GmDGAT1a-TG(16:0/18:2/18:3) | GmDGAT1-linolenic acid [9] | 100 | 4D-II | Known | Linolenic acid (T)-GmPI4Kβ-GmHD-ZIPIII-10-miR166g-PI(16:0/18:2) | miR166-HD-ZIPIII10 [67] |
38 | 3D-III | Known | Linoleic acid (T)-GmPDAT1-GmDGAT1a-TG(16:0/18:2/18:3) | 102 | 4D-II | Known | Oil content (T)-GmPLDζ2-GmHD-ZIPIII-10-miR166j-CerG1(d18:2/22:1) | GmPLDζ2-oil content [59], miR166-HD-ZIPIII10 [67] | |
39 | 3D-III | Known | Oil content (T)-GmPLDζ2-GmDAGK-TG(18:0/16:0/18:1) | GmPLDζ2-oil content [59] | 105 | 4D-II | Known | Stearic acid (T)-GmLEC1-b-GmHD-ZIPIII-10-miR166j-FA(18:0) | |
40 | 3D-III | Known | Stearic acid (T)-GmLEC1-b-GmDGAT1a-TG(18:3/18:3/18:3) | 114 | 4D-II | Known | FA(22:1)-GmZF351-GmHD-ZIPIII-10-miR166k-linoleic acid (T) | ||
44 | 3D-III | New | Palmitic acid (T)-GmBCCP1-GmFUS3-ethanolamine | AtFUS3-palmitic acid [21] | 118 | 4D-II | New | Stearic acid (T)-GmABI3b-GmNLP6-miR1516b-palmitic acid | ABI3-oil content [56] |
45 | 3D-III | Known | Linolenic acid (T)-GmKAR-GmPK-leucine | AtPK-linoleic acid [6] | 119 | 4D-II | New | Stearic acid (T)-GmLEC1-b-GmNLP6-miR1516b-palmitic acid | AtLEC1-stearic acid [56] |
49 | 4D-I | New | Linoleic acid (T)-GmABI4-miR530d-TG(18:1/18:1/18:1) | ABI3-oil content [56] | 121 | 4D-II | New | PE(16:0/18:1)-GmDof11-GmNLP6-miR1516b-palmitic acid (T) | GmDof11-lipid content [26] |
53 | 4D-I | New | Linolenic acid (T)-GmOBO-miR5036-TG(16:0/16:0/18:1) | OBO-miR5036 [66] | 125 | 4D-II | New | LPC(16:0)-GmDREBL-GmTCP-miR319h-linolenic acid (T) | GmDREBL-lipid content [24] |
55 | 4D-II | New | Oleic acid (T)-GmPLDα1-GmARF16-miR160d-TG(18:0/16:0/18:1) | GmPLDα1-oleic acid [13] | 127 | 4D-II | New | Linolenic acid (T)-GmbZIP123-GmTCP-miR319h-TG(16:0/18:1/18:2) | GmbZIP123-lipid content [22] |
59 | 4D-II | New | Stearic acid (T)-GmLEC1-b-GmARF16-miR160d-TG(18:0/18:1/18:1) | AtLEC1-stearic acid [56] | 128 | 4D-II | New | Oil content (T)-GmDHLAT-GmTCP2-miR319f-TG(18:1/18:1/18:3) | GPDH-oil content [9] |