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Table 4 R. fluviale LM-2 secreted proteins

From: Integrative omics analyses of the ligninolytic Rhodosporidium fluviale LM-2 disclose catabolic pathways for biobased chemical production

ID Gene

Description

dbCAN2

Pfam

Signal peptide

RF_07791

3-Carboxymuconate cyclase

–

PF10282

N

RF_01894

Acid protease

–

PF00026

N

RF_01911

Acid protease

–

PF00026

N

RF_03151

Antifreeze glycopeptide AFGP poly

–

–

N

RF_15923

Aspartic peptidase A1

–

PF00026

Y

RF_04634

Aspartic peptidase A1

–

PF00026

Y

RF_08431

Barwin-related endoglucanase domain

–

–

Y

RF_07905

Carbohydrate-binding module family 13

CBM

–

Y

RF_07931

Carbohydrate-binding module family 13

CBM

–

Y

RF_01412

Copper radical oxidase

AA5_1

PF07250

Y

RF_10596

Copper radical oxidase

AA5_1

PF07250

Y

RF_08459

Cutinase

CE5

PF01083

Y

RF_08905

Cytochrome P450

–

PF00067

N

RF_08566

Expansin family

–

PF03330

Y

RF_08896

Expansin family

–

–

Y

RF_08894

Expansin family

–

–

N

RF_12837

Expansin family

–

PF03330

Y

RF_01475

Extracellular aldonolactonase

–

PF10282

N

RF_07820

Extracellular matrix FRAS1

–

–

Y

RF_05280

Glycoside hydrolase family 128

GH128

PF11790

Y

RF_05281

Glycoside hydrolase family 128

GH128

PF11790

Y

RF_05819

Glycoside hydrolase family 128

GH128

PF11790

Y

RF_05820

Glycoside hydrolase family 128

GH128

PF11790

Y

RF_14772

Glycoside hydrolase family 23

GH23

PF01464

Y

RF_03110

Glycosyltransferase family 71

GT71

PF01764

Y

RF_15534

Histone deacetylase HOS2

–

PF00850

N

RF_04368

Hypothetical protein

–

–

Y

RF_13136

Hypothetical protein

–

–

Y

RF_09132

Hypothetical protein

–

–

Y

RF_09130

Hypothetical protein

–

–

Y

RF_02059

Hypothetical protein

–

–

Y

RF_08909

Hypothetical protein

–

–

Y

RF_09346

Hypothetical protein

–

–

Y

RF_02025

Hypothetical protein

–

–

Y

RF_01570

Hypothetical protein

–

–

Y

RF_16610

Hypothetical protein

–

–

Y

RF_14805

Hypothetical protein

–

–

Y

RF_15339

Hypothetical protein

–

–

Y

RF_15335

Hypothetical protein

–

–

N

RF_10235

Hypothetical protein

–

–

N

RF_17543

Hypothetical protein

–

–

N

RF_05010

Hypothetical protein

–

–

N

RF_12461

Hypothetical protein

–

–

Y

RF_05776

Hypothetical protein

–

–

Y

RF_06525

Hypothetical protein

–

–

Y

RF_17040

Hypothetical protein

–

–

Y

RF_03290

Hypothetical protein

–

–

Y

RF_01252

Macrophage activating glycoprotein

–

–

N

RF_01247

Macrophage activating glycoprotein

–

–

Y

RF_01258

Macrophage activating glycoprotein

–

–

Y

RF_02177

Macrophage activating glycoprotein

–

–

Y

RF_13901

Macrophage activating glycoprotein

–

–

Y

RF_16668

Phosphatidylglycerol phosphatidylinositol transfer

–

PF02221

Y

RF_02006

Phosphatidylglycerol phosphatidylinositol transfer

–

PF02221

Y

RF_09948

Polyubiquitin

–

PF00240

N

RF_04571

Putative membrane protein

–

PF07767

N

RF_00438

Thaumatin-like protein

–

PF00314

Y

RF_17737

Thaumatin-like protein

–

PF00314

Y

RF_04689

Ubiquitin

–

PF00240

N

RF_13130

WSC domain

–

PF01822

Y

RF_04359

WSC domain

–

PF01822

Y

  1. Secretome analysis after cultivation in medium containing 0.1% kraft lignin. The protein sequences were analyzed on Blast2Go [68], for the predicted function description; on dbCAN2 [73], for CAZy domain identification; on Pfam [71]; and on SignalP v4 (72), for signal peptide identification