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  1. Co-production of chemicals from lignocellulosic biomass alongside fuels holds promise for improving the economic outlook of integrated biorefineries. In current biochemical conversion processes that use thermo...

    Authors: Davinia Salvachúa, Ali Mohagheghi, Holly Smith, Michael F. A. Bradfield, Willie Nicol, Brenna A. Black, Mary J. Biddy, Nancy Dowe and Gregg T. Beckham
    Citation: Biotechnology for Biofuels 2016 9:28
  2. The primary components of lignocellulosic biomass such as sorghum bagasse are cellulose, hemicellulose, and lignin. Each component can be utilized as a sustainable resource for producing biofuels and bio-based...

    Authors: Hiroshi Teramura, Kengo Sasaki, Tomoko Oshima, Fumio Matsuda, Mami Okamoto, Tomokazu Shirai, Hideo Kawaguchi, Chiaki Ogino, Ko Hirano, Takashi Sazuka, Hidemi Kitano, Jun Kikuchi and Akihiko Kondo
    Citation: Biotechnology for Biofuels 2016 9:27
  3. Biogas production is an economically attractive technology that has gained momentum worldwide over the past years. Biogas is produced by a biologically mediated process, widely known as “anaerobic digestion.” ...

    Authors: Stefano Campanaro, Laura Treu, Panagiotis G. Kougias, Davide De Francisci, Giorgio Valle and Irini Angelidaki
    Citation: Biotechnology for Biofuels 2016 9:26
  4. Clostridium acetobutylicum is a gram-positive, spore-forming, anaerobic bacterium capable of converting various sugars and polysaccharides into solvents (acetone, butanol, and ethanol)...

    Authors: Christian Croux, Ngoc-Phuong-Thao Nguyen, Jieun Lee, Céline Raynaud, Florence Saint-Prix, Maria Gonzalez-Pajuelo, Isabelle Meynial-Salles and Philippe Soucaille
    Citation: Biotechnology for Biofuels 2016 9:23
  5. Compost habitats sustain a vast ensemble of microbes specializing in the degradation of lignocellulosic plant materials and are thus important both for their roles in the global carbon cycle and as potential s...

    Authors: Cheng Wang, Da Dong, Haoshu Wang, Karin Müller, Yong Qin, Hailong Wang and Weixiang Wu
    Citation: Biotechnology for Biofuels 2016 9:22
  6. Cellulose-containing waste products from the agricultural or industrial sector are potentially one of the largest sources of renewable energy on earth. In this study, the biomethane potential (BMP) of two type...

    Authors: Andreas Walter, Sandra Silberberger, Marina Fernández-Delgado Juárez, Heribert Insam and Ingrid H. Franke-Whittle
    Citation: Biotechnology for Biofuels 2016 9:21
  7. Biodetoxification by the fungus Amorphotheca resinae ZN1 provides an effective way of inhibitor removal from pretreated lignocellulose feedstock and has been applied in the process of ethanol, biolipids, and lact...

    Authors: Yanqing He, Jian Zhang and Jie Bao
    Citation: Biotechnology for Biofuels 2016 9:19
  8. Explaining the reduction of hydrolysis rate during lignocellulose hydrolysis is a challenge for the understanding and modelling of the process. This article reports the changes of cellulose and lignin surface...

    Authors: Ville Pihlajaniemi, Mika Henrikki Sipponen, Anne Kallioinen, Antti Nyyssölä and Simo Laakso
    Citation: Biotechnology for Biofuels 2016 9:18
  9. Algae have attracted attention as sustainable producers of lipid-containing biomass for food, animal feed, and for biofuels. Parachlorella kessleri, a unicellular green alga belonging to the class Trebouxiophycea...

    Authors: Shuhei Ota, Kenshiro Oshima, Tomokazu Yamazaki, Sangwan Kim, Zhe Yu, Mai Yoshihara, Kohei Takeda, Tsuyoshi Takeshita, Aiko Hirata, Kateřina Bišová, Vilém Zachleder, Masahira Hattori and Shigeyuki Kawano
    Citation: Biotechnology for Biofuels 2016 9:13
  10. Microbial communities are ubiquitous in nature and play a major role in ecology, medicine, and various industrial processes. In this study, we used stoichiometric metabolic modeling to investigate a community ...

    Authors: Sabine Koch, Dirk Benndorf, Karen Fronk, Udo Reichl and Steffen Klamt
    Citation: Biotechnology for Biofuels 2016 9:17
  11. Utilization of lignocellulosic feedstocks for bioenergy production in developing countries demands competitive but low-tech conversion routes. White-rot fungi (WRF) inoculation and ensiling are two methods pre...

    Authors: Sune T. Thomsen, Jorge E. G. Londoño, Morten Ambye-Jensen, Stefan Heiske, Zsofia Kádár and Anne S. Meyer
    Citation: Biotechnology for Biofuels 2016 9:16
  12. Sugar production via pretreatment and enzymatic hydrolysis of cellulosic feedstock, in this case softwood harvest residues, is a critical step in the biochemical conversion pathway towards drop-in biofuels. Mi...

    Authors: Ikechukwu C. Nwaneshiudu, Indroneil Ganguly, Francesca Pierobon, Tait Bowers and Ivan Eastin
    Citation: Biotechnology for Biofuels 2016 9:15
  13. Butanol is currently one of the most discussed biofuels. Its use provides many benefits in comparison to bio-ethanol, but the price of its fermentative production is still high. Genetic improvements could help...

    Authors: Jan Kolek, Karel Sedlar, Ivo Provaznik and Petra Patakova
    Citation: Biotechnology for Biofuels 2016 9:14
  14. Enzymes degrading plant biomass polymers are widely used in biotechnological applications. Their efficiency can be limited by non-specific interactions occurring with some chemical motifs. In particular, the l...

    Authors: Monica Fong, Jean-Guy Berrin and Gabriel Paës
    Citation: Biotechnology for Biofuels 2016 9:12
  15. Production of biofuels from microalgae has been recognized to be a promising route for a sustainable energy supply. However, the microalgae harvesting process is a bottleneck for industrialization because it i...

    Authors: Yoshiaki Maeda, Takuma Tateishi, Yuta Niwa, Masaki Muto, Tomoko Yoshino, David Kisailus and Tsuyoshi Tanaka
    Citation: Biotechnology for Biofuels 2016 9:10
  16. Lignocellulosic biomass is a promising source of renewable biofuels. However, pretreatment of lignocellulosic biomass generates fermentation inhibitors that adversely affect the growth of industrial microorgan...

    Authors: Yingying Chen, Jiayuan Sheng, Tao Jiang, Joseph Stevens, Xueyang Feng and Na Wei
    Citation: Biotechnology for Biofuels 2016 9:9
  17. Feedstock recalcitrance is the most important barrier impeding cost-effective production of cellulosic biofuels. Pioneer commercial cellulosic ethanol facilities employ thermochemical pretreatment and additio...

    Authors: Julie M. D. Paye, Anna Guseva, Sarah K. Hammer, Erica Gjersing, Mark F. Davis, Brian H. Davison, Jessica Olstad, Bryon S. Donohoe, Thanh Yen Nguyen, Charles E. Wyman, Sivakumar Pattathil, Michael G. Hahn and Lee R. Lynd
    Citation: Biotechnology for Biofuels 2016 9:8
  18. The valorization of biomass for chemicals and fuels requires efficient pretreatment. One effective strategy involves the pretreatment with ionic liquids which enables enzymatic saccharification of wood within ...

    Authors: Jörn Viell, Hideyo Inouye, Noemi K. Szekely, Henrich Frielinghaus, Caroline Marks, Yumei Wang, Nico Anders, Antje C. Spiess and Lee Makowski
    Citation: Biotechnology for Biofuels 2016 9:7
  19. Sorghum (Sorghum bicolor) is one of the most important cereal crops globally and a potential energy plant for biofuel production. In order to explore genetic gain for a range of important quantitative traits, suc...

    Authors: Hong Luo, Wenming Zhao, Yanqing Wang, Yan Xia, Xiaoyuan Wu, Limin Zhang, Bixia Tang, Junwei Zhu, Lu Fang, Zhenglin Du, Wubishet A. Bekele, Shuaishuai Tai, David R. Jordan, Ian D. Godwin, Rod J. Snowdon, Emma S. Mace…
    Citation: Biotechnology for Biofuels 2016 9:6

    The Erratum to this article has been published in Biotechnology for Biofuels 2016 9:37

  20. Acetic acid is one of the major inhibitors in lignocellulose hydrolysates used for the production of second-generation bioethanol. Although several genes have been identified in laboratory yeast strains that a...

    Authors: Jean-Paul Meijnen, Paola Randazzo, María R. Foulquié-Moreno, Joost van den Brink, Paul Vandecruys, Marija Stojiljkovic, Françoise Dumortier, Polona Zalar, Teun Boekhout, Nina Gunde-Cimerman, Janez Kokošar, Miha Štajdohar, Tomaž Curk, Uroš Petrovič and Johan M. Thevelein
    Citation: Biotechnology for Biofuels 2016 9:5
  21. Clostridium acetobutylicum represents a paradigm chassis for the industrial production of the biofuel biobutanol and a focus for metabolic engineering. We have previously developed pro...

    Authors: Muhammad Ehsaan, Wouter Kuit, Ying Zhang, Stephen T. Cartman, John T. Heap, Klaus Winzer and Nigel P. Minton
    Citation: Biotechnology for Biofuels 2016 9:4
  22. Lignocellulosic biomass from softwood represents a valuable resource for the production of biofuels and bio-based materials as alternatives to traditional pulp and paper products. Hemicelluloses constitute an ...

    Authors: Lauren S. McKee, Hampus Sunner, George E. Anasontzis, Guillermo Toriz, Paul Gatenholm, Vincent Bulone, Francisco Vilaplana and Lisbeth Olsson
    Citation: Biotechnology for Biofuels 2016 9:2
  23. Integration of first- and second-generation ethanol production can facilitate the introduction of second-generation lignocellulosic ethanol production. Consolidation of the second-generation with the first-gen...

    Authors: Elisabeth Joelsson, Borbála Erdei, Mats Galbe and Ola Wallberg
    Citation: Biotechnology for Biofuels 2016 9:1
  24. Biologically produced alkanes can be used as ‘drop in’ to existing transportation infrastructure as alkanes are important components of gasoline and jet fuels. Despite the reported microbial production of alka...

    Authors: Hua Ling, Nina Kurniasih Pratomo Juwono, Wei Suong Teo, Ruirui Liu, Susanna Su Jan Leong and Matthew Wook Chang
    Citation: Biotechnology for Biofuels 2015 8:231
  25. The filamentous fungus Trichoderma reesei (anamorph of Hypocrea jecorina) produces increased cellulase expression when grown on cellulose or its derivatives as a sole carbon source. It has been believed that β-gl...

    Authors: Yosuke Shida, Kaori Yamaguchi, Mikiko Nitta, Ayana Nakamura, Machiko Takahashi, Shun-ichi Kidokoro, Kazuki Mori, Kosuke Tashiro, Satoru Kuhara, Tomohiko Matsuzawa, Katsuro Yaoi, Yasumitsu Sakamoto, Nobutada Tanaka, Yasushi Morikawa and Wataru Ogasawara
    Citation: Biotechnology for Biofuels 2015 8:230
  26. Fatty acid composition is an important physiological parameter of microalgae, which is taken as the third generation alternative resource of biodiesel. To boost microalgal research and applications, a convenie...

    Authors: Jiao Liu, Yadong Chu, Xupeng Cao, Yuchao Zhao, Hua Xie and Song Xue
    Citation: Biotechnology for Biofuels 2015 8:229
  27. Substrate accessibility to catalysts has been a dominant theme in theories of biomass deconstruction. However, current methods of quantifying accessibility do not elucidate mechanisms for increased accessibili...

    Authors: Jacob D. Hinkle, Peter N. Ciesielski, Kenny Gruchalla, Kristin R. Munch and Bryon S. Donohoe
    Citation: Biotechnology for Biofuels 2015 8:212
  28. Lignocellulosic biomass is an attractive renewable resource for future liquid transport fuel. Efficient and cost-effective production of bioethanol from lignocellulosic biomass depends on the development of a ...

    Authors: Seung Gon Wi, Eun Jin Cho, Dae-Seok Lee, Soo Jung Lee, Young Ju Lee and Hyeun-Jong Bae
    Citation: Biotechnology for Biofuels 2015 8:228
  29. Biodiesel production results in crude glycerol waste from the transesterification of fatty acids (10 % w/w). The solventogenic Clostridium pasteurianum, an anaerobic Firmicute, can produce butanol from glycerol a...

    Authors: Nicholas R. Sandoval, Keerthi P. Venkataramanan, Theodore S. Groth and Eleftherios T. Papoutsakis
    Citation: Biotechnology for Biofuels 2015 8:227
  30. One-carbon (C1) metabolism is important for synthesizing a range of biologically important compounds that are essential for life. In plants, the C1 pathway is crucial for the synthesis of a large number of sec...

    Authors: Avinash C. Srivastava, Fang Chen, Tui Ray, Sivakumar Pattathil, Maria J. Peña, Utku Avci, Hongjia Li, David V. Huhman, Jason Backe, Breeanna Urbanowicz, Jeffrey S. Miller, Mohamed Bedair, Charles E. Wyman, Lloyd W. Sumner, William S. York, Michael G. Hahn…
    Citation: Biotechnology for Biofuels 2015 8:224
  31. Biodiesels produced from transesterification of vegetable oils have a major quality problem due to the presence of precipitates, which need to be removed to avoid clogging of filters and engine failures. These...

    Authors: Salvador Peiru, Andres Aguirre, Florencia Eberhardt, Mauricio Braia, Rodolfo Cabrera and Hugo G. Menzella
    Citation: Biotechnology for Biofuels 2015 8:223
  32. Jatropha curcas L. (Jatropha) is a potential biodiesel crop that can be cultivated on marginal land because of its strong tolerance to drought and low soil nutrient content. However, s...

    Authors: Munusamy Madhaiyan, Tan Hian Hwee Alex, Si Te Ngoh, Bharath Prithiviraj and Lianghui Ji
    Citation: Biotechnology for Biofuels 2015 8:222
  33. Volatile fatty acids (VFA) are building blocks for the chemical industry. Sustainable, biological production is constrained by production and recovery costs, including the need for intensive pH correction. Mem...

    Authors: Stephen J. Andersen, Pieter Candry, Thais Basadre, Way Cern Khor, Hugo Roume, Emma Hernandez-Sanabria, Marta Coma and Korneel Rabaey
    Citation: Biotechnology for Biofuels 2015 8:221
  34. Carbohydrate binding modules (CBMs) bind polysaccharides and help target glycoside hydrolases catalytic domains to their appropriate carbohydrate substrates. To better understand how CBMs can improve celluloly...

    Authors: Johnnie A. Walker, Taichi E. Takasuka, Kai Deng, Christopher M. Bianchetti, Hannah S. Udell, Ben M. Prom, Hyunkee Kim, Paul D. Adams, Trent R. Northen and Brian G. Fox
    Citation: Biotechnology for Biofuels 2015 8:220
  35. Inhibitors that are generated during thermochemical pretreatment and hydrolysis impair the performance of microorganisms during fermentation of lignocellulosic hydrolysates. In omitting costly detoxification s...

    Authors: Fredrik Nielsen, Elia Tomás-Pejó, Lisbeth Olsson and Ola Wallberg
    Citation: Biotechnology for Biofuels 2015 8:219
  36. Autohydrolysis of lignocellulosic biomass in liquid hot water has been widely studied owing to its high efficiency and relatively low cost. In the perspective of industrial applications, continuous or semi-con...

    Authors: Alessandro Galia, Benedetto Schiavo, Claudia Antonetti, Anna Maria Raspolli Galletti, Leonardo Interrante, Marco Lessi, Onofrio Scialdone and Maria Grazia Valenti
    Citation: Biotechnology for Biofuels 2015 8:218
  37. The conversion of plant biomass to ethanol via enzymatic cellulose hydrolysis offers a potentially sustainable route to biofuel production. However, the inhibition of enzymatic activity in pretreated biomass b...

    Authors: Josh V. Vermaas, Loukas Petridis, Xianghong Qi, Roland Schulz, Benjamin Lindner and Jeremy. C. Smith
    Citation: Biotechnology for Biofuels 2015 8:217
  38. White-rot basidiomycete fungi are potent degraders of plant biomass, with the ability to mineralize all lignocellulose components. Recent comparative genomics studies showed that these fungi use a wide divers...

    Authors: Marie Couturier, David Navarro, Didier Chevret, Bernard Henrissat, François Piumi, Francisco J. Ruiz-Dueñas, Angel T. Martinez, Igor V. Grigoriev, Robert Riley, Anna Lipzen, Jean-Guy Berrin, Emma R. Master and Marie-Noëlle Rosso
    Citation: Biotechnology for Biofuels 2015 8:216
  39. Microalgae are a potential source of sustainable commodities of fuels, chemicals and food and feed additives. The current high production costs, as a result of the low areal productivities, limit the applicati...

    Authors: Jeroen H. de Vree, Rouke Bosma, Marcel Janssen, Maria J. Barbosa and René H. Wijffels
    Citation: Biotechnology for Biofuels 2015 8:215
  40. Non-specific binding of cellulases to lignin has been implicated as a major factor in the loss of cellulase activity during biomass conversion to sugars. It is believed that this binding may strongly impact pr...

    Authors: John M. Yarbrough, Ashutosh Mittal, Elisabeth Mansfield, Larry E. Taylor II, Sarah E. Hobdey, Deanne W. Sammond, Yannick J. Bomble, Michael F. Crowley, Stephen R. Decker, Michael E. Himmel and Todd B. Vinzant
    Citation: Biotechnology for Biofuels 2015 8:214
  41. The production of bioethanol from lignocellulosic feedstocks is dependent on lignocellulosic biomass degradation by hydrolytic enzymes. The main component of lignocellulose is cellulose and different types of ...

    Authors: Leandro José de Assis, Laure Nicolas Annick Ries, Marcela Savoldi, Thaila Fernanda dos Reis, Neil Andrew Brown and Gustavo Henrique Goldman
    Citation: Biotechnology for Biofuels 2015 8:213
  42. Clostridium thermocellum is a promising consolidated bioprocessing candidate organism capable of directly converting lignocellulosic biomass to ethanol. Current ethanol yields, product...

    Authors: Kyle Sander, Charlotte M. Wilson, Miguel Rodriguez Jr., Dawn M. Klingeman, Thomas Rydzak, Brian H. Davison and Steven D. Brown
    Citation: Biotechnology for Biofuels 2015 8:211
  43. Woody biomass is highly recalcitrant to enzymatic sugar release and often requires significant size reduction and severe pretreatments to achieve economically viable sugar yields in biological production of su...

    Authors: Jaclyn D. DeMartini, Marcus Foston, Xianzhi Meng, Seokwon Jung, Rajeev Kumar, Arthur J. Ragauskas and Charles E. Wyman
    Citation: Biotechnology for Biofuels 2015 8:209
  44. Anaerobic fungi reside in the rumen and alimentary tract of herbivores where they play an important role in the digestion of ingested plant biomass. The anaerobic fungal isolate Orpinomyces sp. strain C1A is an e...

    Authors: M. B. Couger, Noha H. Youssef, Christopher G. Struchtemeyer, Audra S. Liggenstoffer and Mostafa S. Elshahed
    Citation: Biotechnology for Biofuels 2015 8:208