Table 2 Comparisons of homologues between C. moewusii and other four green algae with reference genome sequences by mapping, BlastN and BlastX
Algal reference | Cre | ChlN | Coc | Vca |
|---|---|---|---|---|
Reference Transcripts # | 17,114 | 55,307 | 65,067 | 15,285 |
Refernce Ave Length (bp) | 3,117 | 1,370 | 1,475 | 1,817 |
Mapping | ||||
Mapped Transcripts # | 680 | 162 | 144 | 304 |
Mapped Ave Length (bp) | 957 | 759 | 773 | 818 |
Percentage Mapped | 1.99 | 0.47 | 0.42 | 0.89 |
BlastN | ||||
Transcript hit (E-value = 0) | 135 (126)* | 17 (17) | 15 (15) | 38 (38) |
Transcript hit (E-value < =10-6) | 5,386 (3,886) | 2,767 (2,090) | 2,184 (1,712) | 3,749 (2,818) |
Transcript hit (E-value < =10-3) | 14,106 (8,111) | 8,559 (4,797) | 4,855 (3,323) | 10,869 (6,098) |
BlastX | ||||
Transcript hit (E-value = 0) | 972 (876) | 492 (466) | 942 (849) | 633 (591) |
Transcript hit (E-value < =10-6) | 14,784 (7,974) | 10,948 (7,355) | 13,615 (7,053) | 10,646 (7,266) |
Transcript hit (E-value < =10-3) | 19,992 (9,735) | 14,953 (8,945) | 17,960 (8232) | 12,956 (8181) |