Table 1 Functional classification and quantitation of the same proteins identified in different treatments

Cellulase

gi|66844580

glycosyl hydrolase family 43 protein

4

1

7

0.21

0.16±0.03

0.11±0.01

0.03±0.01

5.33

3.67

GH 43 (PF04616)

Y

gi|66845136

beta-1,6-glucanase Neg1

2

1

2

0.13

0.17±0.02

0.47±0.02

0.10±0

1.70

4.70

GH 30 (PF02055)

Y

gi|66845978

beta-1,3-endoglucanase EglC

25

2

29

1.89

0.04±0.01

0.63±0.03

0.11±0.01

0.36

5.73

GH 17 (PF00332)

Y

gi|66846140

cellobiohydrolase

10

1

12

0.76

0.19±0.02

0.10±0.01

0.09±0.01

2.11

1.11

GH 6 (PF01341)

Y

gi|66846336

endo-1,4-beta-glucanase

10

3

10

0.64

0.24±0.01

0.09±0.02

0.13±0.02

1.85

0.69

GH 61 (PF03443)

Y

gi|66846525

endoglucanase

6

2

6

0.39

0.27±0.03

0.14±0.01

0.19±0.04

1.42

0.74

GH 12 (PF01670)

Y

gi|66846526

beta-D-glucoside glucohydrolase

13

2

15

0.97

0.28±0.01

0.16±0.01

0.11±0.01

2.55

1.45

GH 3 (PF00933)

Y

gi|66846837

glucan 1,4-alpha-glucosidase

3

2

1

0.13

0.31±0.04

0.18±0.09

0.05±0.01

6.20

3.60

GH 15 (PF00723)

Y

gi|66846860

extracellular glycosyl hydrolase

1

1

1

0.09

0.17±0.03

0.15±0.01

0.07±0.01

2.43

2.14

GH 62 (PF03664)

Y

gi|66848676

endoglucanase

2

1

2

0.13

0.33±0.07

0.10±0

0.03±0

11.00

3.33

GH 5 (PF00150)

Y

gi|66849674

endoglucanase

58

15

109

6.98

0.31±0.01

0.12±0

0.04±0

7.75

3.00

GH 61 (PM03443)

Y

gi|66850620

extracellular cell wall glucanase

1

1

1

0.07

0.2±0.04

0.55±0.07

0.06±0

3.33

9.17

GH 16 (PF00722)

Y

gi|66850743

beta-glucosidase

1

2

1

0.15

0.42±0

0.26±0.02

0.06±0

7.00

4.33

GH 3 (PF01915)

Y

gi|74670557

1,4-beta-D-glucan-cellobiohydrolyase

21

12

100

7.45

0.28±0.01

0.11±0.01

0.06±0.01

4.67

1.83

GH 7 (PF00840)

Y

gi|74670999

cellobiohydrolase

17

12

35

3.22

0.30±0.01

0.09±0.01

0.06±0.01

5.00

1.50

GH 7 (PF00840)

Y

Hemicellulase

gi|66845449

alpha-galactosidase

2

2

3

0.12

0.25±0.01

0.13±0.11

0.11±0.08

2.27

1.18

Melibiase (PF02065)

N

gi|66845983

endo-1,4-beta-xylanase (XlnA)

31

9

49

3.16

0.34±0.01

0.07±0

0.02±0.01

17.00

3.50

GH 11 (PF00457)

Y

gi|66846833

arabinosidase

1

2

2

0.08

0.44±0.09

0.10±0

0.03±0

14.67

3.33

GH 43 (PF04616)

N

gi|66846861

xylosidase

1

2

4

0.20

0.72±0

0.21±0

0.01±0

72.00

21.00

GH 43 (PF04616)

Y

gi|66848870

endo-1,4-beta-xylanase

21

7

35

2.27

0.35±0.01

0.08±0.01

0.05±0.01

7.00

1.60

GH 10 ( PF00331 )

Y

gi|66850460

mannosidase MsdS

1

2

6

0.09

0.44±0.07

0.06±0.01

0.13±0.02

3.38

0.46

GH 47 ( PF01532)

Y

gi|66851740

endo-1,4-beta-xylanase

2

2

3

0.12

0.35±0.02

0.13±0.05

0.11±0.08

3.18

1.18

GH 10 ( PF00331)

Y

gi|70981394

extracellular arabinanase

4

3

4

0.26

0.27±0.03

0.24±0.01

0.11±0.06

2.45

2.18

GH 43 (PF04616)

Y

gi|70994060

extracellular endo-1,4-beta-xylanase

17

10

26

1.62

0.31±0.01

0.08±0

0.06±0.01

5.17

1.33

GH 10 (PF00331)

Y

gi|74668470

endo-1,4-beta-xylanase

5

3

5

0.23

0.28±0.05

0.24±0.01

0.13±0.06

2.15

1.85

GH 11 (PF00457)

Y

Chitinase

gi|129556953

class V chitinase

1

1

1

0.09

0.27±0.03

0.10±0.01

0.35±0.07

0.77

0.29

GH18 (PF00704)

Y

gi|129558344

class V chitinase

6

8

14

0.86

0.24±0.01

0.26±0.01

0.1±0.02

2.40

2.60

GH 18 (PF00704)

Y

gi|66846625

class III chitinase

5

5

5

0.30

0.19±0.04

0.17±0.06

0.15±0.06

1.27

1.13

GH 18 (PF00704)

Y

gi|70983075

class V chitinase ChiB1

72

23

159

10.35

0.27±0.01

0.09±0

0.11±0.01

2.45

0.82

GH 18 (PF00704)

Y

Phosphatase, lipase, pectinase, lignin degrading proteins, esterase and protease

gi|129557040

Ser/Thr protein phosphatase family protein

1

2

2

0.09

0.49±0.08

0.06±0.01

0.15±0.02

3.27

0.40

Metallophos (PF00149)

N

gi|129558573

esterase

1

2

3

0.18

0.07±0

0.26±0.02

0.55±0.05

0.13

0.47

-

Y

gi|66845766

extracellular lipase

37

7

64

4.12

0.07±0.01

0.34±0.01

0.35±0.02

0.20

0.97

Lipase 3 (PF01764)

Y

gi|66846844

pectate lyase

1

1

1

0.07

0.73±0.04

0.15±0.01

0.25±0.04

2.92

0.60

Pec_lyase_C (PF00544)

Y

gi|66849090

metalloprotease

10

4

13

0.84

0.38±0.07

0.1±0.03

0.07±0.04

5.43

1.43

Peptidase_M35 (MF02102)

Y

gi|66853735

cellobiose dehydrogenase

10

3

12

0.79

0.16±0.02

0.41±0.03

0.19±0.02

0.84

2.16

GMC_oxred_N (PF00732)

Y

gi|70986104

CAT1 mycelial catalase Cat1

8

5

10

0.60

0.21±0.02

0.09±0.01

0.25±0.02

0.84

0.36

Catalase (PF00199)

N

gi|70997966

Cu, Zn superoxide dismutase

4

1

4

0.26

0.18±0.03

0.19±0.01

0.18±0.01

1.00

1.06

Sod_Cu (PF00080)

N

Permease, reductase, helicase and Transporter

gi|66844481

high affinity methionine permease

2

1

2

0.13

0.28±0.01

0.19±0.02

0.17±0.02

1.65

1.12

AA_permease2 ( PF13520)

N

gi|66848496

thioredoxin reductase GliT

2

4

4

0.23

0.14±0.08

0.37±0.06

0.29±0.01

0.48

1.28

Pyr_redox_2 (PF07992)

N

gi|66848977

telomere-associated RecQ helicase

31

3

52

3.16

0.01±0

0.47±0

0.46±0.01

0.02

1.02

DUF3505 (PF12013)

N

gi|70982865

MFS transporter

8

3

47

2.40

0.26±0

0.29±0.01

0.15±0

1.73

1.93

MFS_1 (PF07690)

N

Other proteins

gi|129555482

cytochrome P450

5

2

5

0.29

0.11±0.03

0.27±0.03

0.31±0.10

0.35

0.87

p450 (PF00067)

N

gi|129555486

secreted antimicrobial peptide

3

2

3

0.16

0.10±0.04

0.51±0.09

0.20±0.01

0.50

2.55

MiAMP1 (PF09117)

Y

gi|146324637

hybrid PKS-NRPS enzyme

2

2

3

0.13

0.18±0.02

0.16±0.06

0.32±0.02

0.56

0.50

Acyl_transf_1 (PF00698)

N

gi|66847207

HECT domain protein

5

3

8

0.51

0.29±0.03

0.12±0.01

0.15±0.02

1.93

0.80

HECT (PF00632)

N

gi|66847547

C6 finger domain protein

2

1

2

0.13

0.02±0

0.51±0

0.39±0.02

0.05

1.31

Zn_clus (PF00172)

N

gi|66851935

aldose 1-epimerase

2

2

13

0.11

0.26±0.04

0.16±0.06

0.32±0.07

0.81

0.50

Aldose-epim (PF01263)

N

gi|66852539

glutaminase GtaA

2

2

3

0.18

0.40±0.01

0.03±0

0.07±0

5.71

0.43

DUF1793 (PF08760)

Y

gi|66853400

translation initiation factor eIF-2B

49

1

64

3.95

0.30±0

0.27±0

0.09±0

3.33

3.00

W2 (PF02020)

N