Sample name | Sequencing stats and pre-alignment QA/QC of raw data/ pre-alignment QA/QC of post-trimming data | Post-alignment QA/QC after alignment | |||||
---|---|---|---|---|---|---|---|
Total reads | Avg. read length | Avg. read quality | % N | % GC | Total reads | Aligned (%) | |
D9_S7_L001_R1 | 954,340/954,300 | 137.28/137.2 | 38/38.01 | 9.62E−04/0 | 47.74/47.73 | 954,300 | 56.72 |
D9_S7_L001_R2 | 954,340/954,300 | 137.07/136.98 | 37.69/37.7 | 1.04E−03/0 | 47.67/47.66 | ||
WT_S8_L001_R1 | 1,084,599/1,084,546 | 136.67/136.59 | 38/38.01 | 1.11E−03/0 | 47.41/47.4 | 1,084,546 | 57.24 |
WT_S8_L001_R2 | 1,084,599/1,084,546 | 136.36/136.28 | 37.76/37.78 | 1.25E−03/0 | 47.34/47.33 |