Table 1 General features of Penicillium echinulatum genome
Category | Wild-type 2HH | Mutant S1M29 |
|---|---|---|
Genome statistic | ||
 Genome size (MB) | 29.82 | 29.83 |
 Number of bases | 29.821.618 | 29.827.032 |
 Number of ambiguous bases (N) | 92.041 | 82.971 |
 Number of contigs | 1018 | 1124 |
 n50 | 147,886 | 137,718 |
 n90 | 32,016 | 32,016 |
 GC % | 50.5 | 50.5 |
 Number of predicted genes | 8504 | 8552 |
 Average gene size | 1686 | 1684 |
 Median gene size | 1441 | 1442 |
 Average protein size (AA) | 505 | 504 |
 Number of predicted exons | 25.098 | 25.494 |
 Number of predicted introns | 16,638 | 16,997 |
 Average number of exons per gene | 3 | 3 |
 Average number of introns per gene | 2 | 2 |
 Average exon size | 514 | 507 |
 Average intron size | 87 | 87 |
 Median intron size | 73 | 23 |
 Intergenic size | 15,484,048 | 15,422,613 |
 Intragenic size | 14,337,570 | 14,404,419 |
 Number of introns in gene with largest splicing capacity | 23 | 23 |
 Number of putative secreted proteins | 649 | 649 |
 Number of predicted proteins with e value of e 5 or less | 8157 | 8190 |
Genome read | ||
 Number of reads | 679.730.992 | 545.354.384 |
 Number of read pairs | 339.865.496 | 272.677.192 |
 Number of bases | 33.986.549.600 | 27.264.719.200 |