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Table 1 Model input parameters used to establish a base scenario for enzymatic cellulose hydrolysis. Kinetic values were obtained from the reported activities of Trichoderma reesei cellulases.

From: A cellular automaton model of crystalline cellulose hydrolysis by cellulases

Parameter and units

Value

Parameter and units

Value

Cellulose rod dimensions (glucose residues)

30 × 30 × 150

EG adsorption strength

9,999

EG, CBHI and CBHII adsorption probabilities (%)

90

CBHI adsorption strength

9,999

EG concentration (mM)

800a

CBHII adsorption strength

9,999

CBHI concentration (mM)

2,000a

Ki CBHI-cellobiose (mM)

1.6d

CBHII concentration (mM)

600a

Ki CBHII-cellobiose (mM)

1.6d

BG concentration (mM)

20a

Ki EG-cellobiose (mM)

11d

EG walk period (ms)

1b

Km BG-cellobiose (mM)

0.5e,f

CBHI walk period (ms)

1b

kcat BG-cellobiose (s-1)h

40e

CBHII walk period (ms)

1b

Ki BG-glucose (mM)

0.5f

EG activity periodg/s.d. (ms)

100/1

Timesteps

150,000

CBHI activity period/s.d. (ms)

500/1c,d

Iterations per sample

100

CBHII activity period/s.d. (ms)

500/1c,d

Maximum model life (s)

150

CBHI processivity/s.d. (reactions)

100/20 c

Sample period (ms)

250

CBHII processivity/s.d. (reactions)

100/20 c

EG, CBHI, CBHII and BG lifetime (s)

0 (infinite)

  1. The following values were taken from or extrapolated from these literature sources: a [60]; b [34]; c [36]; d [58]; e [57]; f [59]; g activity period = 1/kcat for enzyme activities against solid substrates; h kcat values given for BG only, EG and CBH solution activities = 0 for the base case. BG: β-glucosidase; CBH: cellobiohydrolase; EG: endoglucanase; s.d.: standard deviation.