From: A cellular automaton model of crystalline cellulose hydrolysis by cellulases
Parameter and units | Value | Parameter and units | Value |
---|---|---|---|
Cellulose rod dimensions (glucose residues) | 30 × 30 × 150 | EG adsorption strength | 9,999 |
EG, CBHI and CBHII adsorption probabilities (%) | 90 | CBHI adsorption strength | 9,999 |
EG concentration (mM) | 800a | CBHII adsorption strength | 9,999 |
CBHI concentration (mM) | 2,000a | Ki CBHI-cellobiose (mM) | 1.6d |
CBHII concentration (mM) | 600a | Ki CBHII-cellobiose (mM) | 1.6d |
BG concentration (mM) | 20a | Ki EG-cellobiose (mM) | 11d |
EG walk period (ms) | 1b | Km BG-cellobiose (mM) | 0.5e,f |
CBHI walk period (ms) | 1b | kcat BG-cellobiose (s-1)h | 40e |
CBHII walk period (ms) | 1b | Ki BG-glucose (mM) | 0.5f |
EG activity periodg/s.d. (ms) | 100/1 | Timesteps | 150,000 |
CBHI activity period/s.d. (ms) | 500/1c,d | Iterations per sample | 100 |
CBHII activity period/s.d. (ms) | 500/1c,d | Maximum model life (s) | 150 |
CBHI processivity/s.d. (reactions) | 100/20 c | Sample period (ms) | 250 |
CBHII processivity/s.d. (reactions) | 100/20 c | EG, CBHI, CBHII and BG lifetime (s) | 0 (infinite) |