From: Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse
Motifs* | log2 Cy5/Cy3 ratio** | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Gene locus | Sequence | Location | Orientation |
GH family | SP | MS | Description | 6 hours | 12 hours | 24 hours |
An12g01850 | GH2 | No | β-mannosidase | 2.03 | 1.63 | 1.01 | ||||
An01g09960 | GGCTAA |
-147 -133 | 1 | GH3 | Yes | No | Exo-1,4-β-xylosidase (xlnD) | 6.70 | 5.85 | 5.51 |
An17g00300 | TTAGCC | -487-9 | -1 | GH3 | Yes | No | Bifunctional xylosidase-arabinosidase (xarB) | 7.04 | 6.42 | 4.80 |
An03g00940 | GGCTAA |
-495 -288 | 1 | GH10 | Yes | Yes | Endo-1.4-β-xylanase A precursor (xynA) | 6.77 | 5.86 | 5.52 |
An01g14600 | GH11 | Yes | No | Endo-1.4-β-xylanase | 1.88 | 1.66 | 2.17 | |||
An15g04550 | GGCTAA TTAGCC |
-322 -270 |
1 -1 | GH 11 | Yes | No | Xylanase A (xynA) | 6.21 | 6.21 | 6.19 |
An01g00780 | GGCTAA |
-216 124 | 1 | GH11 | Yes | Yes | Endo-1.4-β-xylanase B (xynB) | 8.86 | 8.36 | 8.24 |
An01g03340 | GGCTAA | -244 | 1 | GH12 | Yes | No | Xyloglucan-specific endo-β-1.4-glucanase | 5.79 | 5.29 | 5.05 |
An14g01800 | GH27 | Yes | No | α-galactosidase D | 3.01 | 1.63 | 1.23 | |||
An06g00170 | GH27 | Yes | No | α-galactosidase A | 3.25 | 2.57 | 5.62 | |||
An02g11150 | GH27 | Yes | No | α-galactosidase (aglB) | 4.16 | 2.00 | 1.38 | |||
An11g03120 | GH43 | No | No | Endo-1.4-β-xylanase (xynD) | 2.09 | 1.70 | 1.95 | |||
An02g00140 | GH43 | No | No | Xylan-1.4-β-xylosidase (xynB) | 2.88 | 1.43 | 1.34 | |||
An09g01190 | GH43 | Yes | No | Endo-1.5-α-arabinanase (abnA) | 6.54 | 4.31 | 4.78 | |||
An08g01710 | GH51 | No | No | α-L-arabinofuranosidase (abfA) | 5.69 | 2.66 | 4.38 | |||
An15g02300 | CTAGCC TTAGCC |
-39 -473 -421 |
-1 -1 | GH54 | Yes | No | Arabinofuranosidase B (abfB) | 7.94 | 3.43 | 2.49 |
An03g00960 | GGCTAA | -346 | 1 | GH62 | Yes | No | 1.4-β-D-arabinoxylan arabinofuranohydrolase (axhA) | 6.13 | 6.05 | 6.00 |
An14g05800 | GGCTAG GGCTAA |
-412 -277 | 1 | GH67 | Yes | No | α-glucuronidase (aguA) | 9.12 | 8.36 | 7.72 |
An16g02760 | GGCTAA | -245 | 1 | GH95 | No | No | α-fucosidase | |||
An12g02550 | TTAGCC | -500 | -1 | CE1 | Yes | No | Feruloyl esterase | 7.18 | 7.24 | 7.87 |
An12g05010 | CE1 | Yes | No | Acetyl xylan esterase (axeA) | 8.31 | 7.72 | 7.77 |