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Table 4 Gene regions assessed and their biochemical role

From: High levels of variation in Salix lignocellulose genes revealed using poplar genomic resources

Locus Phytozome gene ID targeted1 Role
4CL1prom Not used Lignin biosynthesis
4CL1 Not used Lignin biosynthesis
4CL2 Potri.019G049500 Lignin biosynthesis
AP2 Not used Putative lignin regulation
BHLH144 Not used Putative lignin regulation
BZIP47 Not used Putative lignin regulation
BZIP9 Not used Putative lignin regulation
C3H1 Potri.006G033300 Lignin biosynthesis
C4H Potri.013G157900 Lignin biosynthesis
CAD Potri.009G095800 Lignin biosynthesis
CCoAOMT Not used Lignin biosynthesis
CCR Not used Lignin biosynthesis
CesA1 Potri.002G257900 Cellulose biosynthesis
CesA2 Potri.005G194200 Cellulose biosynthesis
F5H Not used Lignin biosynthesis
GA-20 Potri.015G134600 Growth hormone
HCT Not used Lignin biosynthesis
Knat7 Potri.001G112200 Putative lignin regulation
Kor1 Potri.003G151700 Korrigan – endoglucanase cell wall formation
myb Not used Transcription
Myb63 Not used Putative lignin regulation
Mybr2r3 Potri.015G033600 Transcription
PAL1 Potri.006G126800 Lignin biosynthesis
PAL2 Not used Lignin biosynthesis
PTOMT1 Not used Lignin biosynthesis
SAD Potri.016G078300 Lignin biosynthesis
Sucrose synthase Not used Sucrose biosynthesis
  1. 1Based on P. trichocarpa v3 from Phytozome (http://www.phytozome.net/poplar).
  2. Details as in Kelleher et al.[17].