Table 4 Gene regions assessed and their biochemical role
From: High levels of variation in Salix lignocellulose genes revealed using poplar genomic resources
Locus | Phytozome gene ID targeted1 | Role |
|---|---|---|
4CL1prom | Not used | Lignin biosynthesis |
4CL1 | Not used | Lignin biosynthesis |
4CL2 | Potri.019G049500 | Lignin biosynthesis |
AP2 | Not used | Putative lignin regulation |
BHLH144 | Not used | Putative lignin regulation |
BZIP47 | Not used | Putative lignin regulation |
BZIP9 | Not used | Putative lignin regulation |
C3H1 | Potri.006G033300 | Lignin biosynthesis |
C4H | Potri.013G157900 | Lignin biosynthesis |
CAD | Potri.009G095800 | Lignin biosynthesis |
CCoAOMT | Not used | Lignin biosynthesis |
CCR | Not used | Lignin biosynthesis |
CesA1 | Potri.002G257900 | Cellulose biosynthesis |
CesA2 | Potri.005G194200 | Cellulose biosynthesis |
F5H | Not used | Lignin biosynthesis |
GA-20 | Potri.015G134600 | Growth hormone |
HCT | Not used | Lignin biosynthesis |
Knat7 | Potri.001G112200 | Putative lignin regulation |
Kor1 | Potri.003G151700 | Korrigan – endoglucanase cell wall formation |
myb | Not used | Transcription |
Myb63 | Not used | Putative lignin regulation |
Mybr2r3 | Potri.015G033600 | Transcription |
PAL1 | Potri.006G126800 | Lignin biosynthesis |
PAL2 | Not used | Lignin biosynthesis |
PTOMT1 | Not used | Lignin biosynthesis |
SAD | Potri.016G078300 | Lignin biosynthesis |
Sucrose synthase | Not used | Sucrose biosynthesis |