Table 3 Results of mappings of metagenomic reads against selected pathogenic bacteria. The number and abundance of mapped reads per dataset and the number of covered bases and coverage are shown

Mapped reads

Covered bases

Mapped reads

Covered bases

Mapped reads

Covered bases

Mapped reads

Covered bases

Mapped reads

Covered bases

Mapped reads

Covered bases

Mapped reads

Covered bases

952 (0.38%)

2,674 bp (0.05%)

1,986 (0.65%)

6,509 bp (0.18%)

2,534 (0.82%)

7,249 bp (0.18%)

2,802 (0.89%)

6,647 bp (0.18%)

1,658 (0.63%)

4,874 bp (0.13%)

1,469 (0.54%)

3,937 bp (0.10%)

9,108 (0.68%)

22,801 bp (0.56%)

980 (0.39%)

2,401 bp (0.05%)

2,050 (0.68%)

6,295 bp (0.15%)

2,554 (0.82%)

8,738 bp (0.21%)

2,953 (0.94%)

5,995 bp (0.14%)

1,638 (0.62%)

3,424 bp (0.07%)

1,483 (0.54%)

3,025 bp (0.07%)

9,171 (0.68%)

21,890 bp (0.53%)

801 (0.32%)

3,578 bp (0.14%)

1,779 (0.59%)

4,588 bp (0.18%)

2,284 (0.74%)

4,866 bp (0.18%)

2,431 (0.77%)

3,891 bp (0.14%)

1,401 (0.53%)

4,826 bp (0.18%)

1,254 (0.46%)

5,161 bp (0.18%)

7,807 (0.58%)

14,142 bp (0.50%)

878 (0.35%)

3,263 bp (0.13%)

1,878 (0.62%)

4,608 bp (0.21%)

2,371 (0.77%)

7,132 bp (0.29%)

2,675 (0.85%)

3,888 bp (0.17%)

1,538 (0.58%)

3,343 bp (0.13%)

1,394 (0.51%)

3,520 bp (0.17%)

8,637 (0.64%)

24,313 bp (1.00%)

882 (0.35%)

922 bp (0.03%)

1,801 (0.59%)

3,706 bp (0.10%)

2,406 (0.78%)

7,634 bp (0.20%)

2,663 (0.84%)

2,373 bp (0.05%)

1,612 (0.61%)

4,247 bp (0.10%)

1,402 (0.51%)

3,900 bp (0.10%)

9,209 (0.68%)

27,694 bp (0.70%)

965 (0.39%)

1,978 bp (0.05%)

2,044 (0.67%)

5,608 bp (0.15%)

2,563 (0.83%)

7,219 bp (0.17%)

3,023 (0.96%)

5,785 bp (0.15%)

1,623 (0.61%)

2,670 bp (0.07%)

1,481 (0.54%)

3,430 bp (0.07%)

9,252 (0.69%)

23,436 bp (0.57%)

967 (0.39%)

7,551 bp (0.17%)

1,843 (0.61%)

5,448 bp (0.11%)

2,449 (0.79%)

6,611 bp (0.15%)

2,637 (0.84%)

4,880 bp (0.11%)

1,638 (0.62%)

3,627 bp (0.08%)

1,414 (0.52%)

4,048 bp (0.08%)

9,207 (0.68%)

28,182 bp (0.58%)

925 (0.37%)

1,767 bp (0.05%)

1,887 (0.62%)

3,760 bp (0.09%)

2,435 (0.79%)

5,813 bp (0.14%)

2,894 (0.92%)

3,264 bp (0.07%)

1,595 (0.60%)

5,668 bp (0.14%)

1,423 (0.52%)

5,054 bp (0.12%)

8,754 (0.65%)

21,056 bp (0.48%)

914 (0.37%)

2,211 bp (0.06%)

1,854 (0.61%)

4,932 bp (0.15%)

2,400 (0.78%)

7,454 bp (0.21%)

2,733 (0.87%)

4,703 bp (0.15%)

1,554 (0.59%)

4,012 bp (0.12%)

1,367 (0.50%)

2,847 bp (0.09%)

9,007 (0.67%)

21,144 bp (0.64%)

922 (0.37%)

2,727 bp (0.10%)

1,917 (0.63%)

4,810 bp (0.17%)

2,520 (0.81%)

7,577 bp (0.28%)

2,933 (0.93%)

5,999 bp (0.21%)

1,563 (0.59%)

5,470 bp (0.17%)

1,415 (0.52%)

4,344 bp (0.14%)

8,970 (0.67%)

26,200 bp (0.90%)

578 (0.23%)

2,556 bp (0.05%)

1,103 (0.36%)

2,199 bp (0.04%)

1,447 (0.47%)

2,796 bp (0.06%)

1,432 (0.45%)

1,986 bp (0.04%)

1,004 (0.38%)

4,317 bp (0.08%)

925 (0.34%)

4,002 bp (0.08%)

5,233 (0.39%)

9,149 bp (0.16%)

584 (0.23%)

2,672 bp (0.05%)

1,137 (0.37%)

2,165 bp (0.04%)

1,470 (0.47%)

2,930 bp (0.06%)

1,587 (0.50%)

2,086 bp (0.04%)

1,030 (0.39%)

4,222 bp (0.08%)

919 (0.34%)

4,116 bp (0.08%)

5,426 (0.40%)

8,895 bp (0.16%)

677 (0.27%)

279 bp (0.01%)

1,239 (0.41%)

1,314 bp (0.02%)

1,610 (0.52%)

848 bp (0.02%)

1,854 (0.59%)

384 bp (0.01%)

1,112 (0.42%)

1,642 bp (0.04%)

996 (0.36%)

1,010 bp (0.02%)

6,023 (0.45%)

6,932 bp (0.12%)

678 (0.27%)

394 bp (0.01%)

1,282 (0.42%)

905 bp (0.02%)

1,666 (0.54%)

1,376 bp (0.02%)

1,805 (0.57%)

1,084 bp (0.02%)

1,146 (0.43%)

1,370 bp (0.02%)

1,023 (0.37%)

1,069 bp (0.02%)

6,008 (0.45%)

7,358 bp (0.13%)

709 (0.28%)

991 bp (0.02%)

1,290 (0.43%)

1,333 bp (0.02%)

1,738 (0.56%)

1,313 bp (0.02%)

1,950 (0.62%)

632 bp (0.01%)

1,206 (0.45%)

1,889 bp (0.04%)

1,042 (0.38%)

1,312 bp (0.02%)

6,314 (0.47%)

4,543 bp (0.11%)

714 (0.29%)

830 bp (0.02%)

1,285 (0.42%)

1,225 bp (0.02%)

1,714 (0.55%)

1,052 bp (0.02%)

1,909 (0.61%)

733 bp (0.02%)

1,183 (0.45%)

1,594 bp (0.03%)

1,050 (0.38%)

1,381 bp (0.02%)

6,190 (0.46%)

4,867 bp (0.10%)

687 (0.28%)

364 bp (0.01%)

1,236 (0.41%)

1,035 bp (0.02%)

1,619 (0.52%)

1,298 bp (0.02%)

1,874 (0.59%)

462 bp (0.01%)

1,116 (0.42%)

1,816 bp (0.04%)

1,000 (0.36%)

996 bp (0.02%)

5,852 (0.43%)

3,744 bp (0.08%)

744 (0.30%)

474 bp (0.01%)

1,307 (0.43%)

848 bp (0.02%)

1,682 (0.54%)

1,046 bp (0.02%)

1,898 (0.60%)

256 bp (0.01%)

1,191 (0.45%)

1,555 bp (0.02%)

1,024 (0.37%)

1,334 bp (0.01%)

6,242 (0.46%)

3,489 bp (0.06%)

681 (0.27%)

818 bp (0.02%)

1,241 (0.41%)

1,544 bp (0.03%)

1,613 (0.52%)

676 bp (0.01%)

1,820 (0.58%)

566 bp (0.01%)

1,169 (0.44%)

1,598 bp (0.03%)

1,056 (0.39%)

1,151 bp (0.02%)

6,131 (0.45%)

7,225 bp (0.15%)

639 (0.26%)

560 bp (0.01%)

1,226 (0.40%)

482 bp (0.01%)

1,561 (0.50%)

1,135 bp (0.02%)

1,833 (0.58%)

613 bp (0.01%)

1,102 (0.42%)

1,818 bp (0.04%)

1,019 (0.37%)

646 bp (0.01%)

6,082 (0.57%)

7,628 bp (0.18%)

647 (0.26%)

248 bp (0.01%)

1,270 (0.42%)

489 bp (0.01%)

1,654 (0.53%)

329 bp (0.01%)

1,848 (0.59%)

112 bp (0.01%)

1,145 (0.43%)

452 bp (0.01%)

1,026 (0.37%)

967 bp (0.02%)

6,181 (0.46%)

6,211 bp (0.12%)

697 (0.28%)

663 bp (0.01%)

1,303 (0.43%)

591 bp (0.01%)

1,661 (0.54%)

376 bp (0.01%)

1,884 (0.60%)

438 bp (0.01%)

1,164 (0.44%)

1,297 bp (0.02%)

1,059 (0.39%)

1,030 bp (0.02%)

6,268 (0.47%)

9,630 bp (0.20%)

713 (0.29%)

1,378 bp (0.05%)

1,295 (0.43%)

1,166 bp (0.05%)

1,692 (0.55%)

4,150 bp (0.18%)

2,134 (0.68%)

3,248 bp (0.14%)

1,149 (0.43%)

3,535 bp (0.16%)

982 (0.36%)

2,585 bp (0.12%)

6,858 (0.51%)

13,756 bp (0.58%)

703 (0.28%)

977 bp (0.05%)

1,218 (0.40%)

1,964 bp (0.11%)

1,619 (0.52%)

2,741 bp (0.15%)

1,997 (0.63%)

2,784 bp (0.15%)

1,086 (0.41%)

2,853 bp (0.16%)

966 (0.35%)

3,039 bp (0.16%)

6,649 (0.49%)

13,704 bp (0.76%)

632 (0.25%)

218 bp (0.01%)

1,122 (0.37%)

675 bp (0.01%)

1,580 (0.51%)

276 bp (0.01%)

1,829 (0.58%)

688 bp (0.01%)

1,106 (0.42%)

595 bp (0.01%)

978 (0.36%)

566 bp (0.01%)

5,888 (0.44%)

2,410 bp (0.05%)

634 (0.25%)

462 bp (0.01%)

1,134 (0.37%)

0 bp (0%)

1,510 (0.49%)

583 bp (0.01%)

1,782 (0.57%)

512 bp (0.01%)

1,084 (0.41%)

103 bp (0.01%)

921 (0.34%)

1,110 bp (0.02%)

5,925 (0.44%)

533 bp (0.01%)