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Table 3 Results of mappings of metagenomic reads against selected pathogenic bacteria. The number and abundance of mapped reads per dataset and the number of covered bases and coverage are shown

From: Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms

  B55   S55   S65   S70   G5   G30   U1  
  Mapped reads Covered bases Mapped reads Covered bases Mapped reads Covered bases Mapped reads Covered bases Mapped reads Covered bases Mapped reads Covered bases Mapped reads Covered bases
Clostridium botulinum A ATCC 3502 952 (0.38%) 2,674 bp (0.05%) 1,986 (0.65%) 6,509 bp (0.18%) 2,534 (0.82%) 7,249 bp (0.18%) 2,802 (0.89%) 6,647 bp (0.18%) 1,658 (0.63%) 4,874 bp (0.13%) 1,469 (0.54%) 3,937 bp (0.10%) 9,108 (0.68%) 22,801 bp (0.56%)
Clostridium botulinum B1 Okra 980 (0.39%) 2,401 bp (0.05%) 2,050 (0.68%) 6,295 bp (0.15%) 2,554 (0.82%) 8,738 bp (0.21%) 2,953 (0.94%) 5,995 bp (0.14%) 1,638 (0.62%) 3,424 bp (0.07%) 1,483 (0.54%) 3,025 bp (0.07%) 9,171 (0.68%) 21,890 bp (0.53%)
Clostridium botulinum C Stockholm 801 (0.32%) 3,578 bp (0.14%) 1,779 (0.59%) 4,588 bp (0.18%) 2,284 (0.74%) 4,866 bp (0.18%) 2,431 (0.77%) 3,891 bp (0.14%) 1,401 (0.53%) 4,826 bp (0.18%) 1,254 (0.46%) 5,161 bp (0.18%) 7,807 (0.58%) 14,142 bp (0.50%)
Clostridium botulinum D 1873 878 (0.35%) 3,263 bp (0.13%) 1,878 (0.62%) 4,608 bp (0.21%) 2,371 (0.77%) 7,132 bp (0.29%) 2,675 (0.85%) 3,888 bp (0.17%) 1,538 (0.58%) 3,343 bp (0.13%) 1,394 (0.51%) 3,520 bp (0.17%) 8,637 (0.64%) 24,313 bp (1.00%)
Clostridium botulinum E1 BoNT E Beluga 882 (0.35%) 922 bp (0.03%) 1,801 (0.59%) 3,706 bp (0.10%) 2,406 (0.78%) 7,634 bp (0.20%) 2,663 (0.84%) 2,373 bp (0.05%) 1,612 (0.61%) 4,247 bp (0.10%) 1,402 (0.51%) 3,900 bp (0.10%) 9,209 (0.68%) 27,694 bp (0.70%)
Clostridium botulinum F Langeland 965 (0.39%) 1,978 bp (0.05%) 2,044 (0.67%) 5,608 bp (0.15%) 2,563 (0.83%) 7,219 bp (0.17%) 3,023 (0.96%) 5,785 bp (0.15%) 1,623 (0.61%) 2,670 bp (0.07%) 1,481 (0.54%) 3,430 bp (0.07%) 9,252 (0.69%) 23,436 bp (0.57%)
Clostridium butyricum E4 BoNT E BL5262 967 (0.39%) 7,551 bp (0.17%) 1,843 (0.61%) 5,448 bp (0.11%) 2,449 (0.79%) 6,611 bp (0.15%) 2,637 (0.84%) 4,880 bp (0.11%) 1,638 (0.62%) 3,627 bp (0.08%) 1,414 (0.52%) 4,048 bp (0.08%) 9,207 (0.68%) 28,182 bp (0.58%)
Clostridium difficile 630 925 (0.37%) 1,767 bp (0.05%) 1,887 (0.62%) 3,760 bp (0.09%) 2,435 (0.79%) 5,813 bp (0.14%) 2,894 (0.92%) 3,264 bp (0.07%) 1,595 (0.60%) 5,668 bp (0.14%) 1,423 (0.52%) 5,054 bp (0.12%) 8,754 (0.65%) 21,056 bp (0.48%)
Clostridium perfringens ATCC 13124 914 (0.37%) 2,211 bp (0.06%) 1,854 (0.61%) 4,932 bp (0.15%) 2,400 (0.78%) 7,454 bp (0.21%) 2,733 (0.87%) 4,703 bp (0.15%) 1,554 (0.59%) 4,012 bp (0.12%) 1,367 (0.50%) 2,847 bp (0.09%) 9,007 (0.67%) 21,144 bp (0.64%)
Clostridium tetani E88 922 (0.37%) 2,727 bp (0.10%) 1,917 (0.63%) 4,810 bp (0.17%) 2,520 (0.81%) 7,577 bp (0.28%) 2,933 (0.93%) 5,999 bp (0.21%) 1,563 (0.59%) 5,470 bp (0.17%) 1,415 (0.52%) 4,344 bp (0.14%) 8,970 (0.67%) 26,200 bp (0.90%)
Escherichia coli O104:H4 GOS1 578 (0.23%) 2,556 bp (0.05%) 1,103 (0.36%) 2,199 bp (0.04%) 1,447 (0.47%) 2,796 bp (0.06%) 1,432 (0.45%) 1,986 bp (0.04%) 1,004 (0.38%) 4,317 bp (0.08%) 925 (0.34%) 4,002 bp (0.08%) 5,233 (0.39%) 9,149 bp (0.16%)
Escherichia coli O104:H4 GOS2 584 (0.23%) 2,672 bp (0.05%) 1,137 (0.37%) 2,165 bp (0.04%) 1,470 (0.47%) 2,930 bp (0.06%) 1,587 (0.50%) 2,086 bp (0.04%) 1,030 (0.39%) 4,222 bp (0.08%) 919 (0.34%) 4,116 bp (0.08%) 5,426 (0.40%) 8,895 bp (0.16%)
Escherichia coli O157:H7 EC4115 677 (0.27%) 279 bp (0.01%) 1,239 (0.41%) 1,314 bp (0.02%) 1,610 (0.52%) 848 bp (0.02%) 1,854 (0.59%) 384 bp (0.01%) 1,112 (0.42%) 1,642 bp (0.04%) 996 (0.36%) 1,010 bp (0.02%) 6,023 (0.45%) 6,932 bp (0.12%)
Escherichia coli O55:H7 CB9615 678 (0.27%) 394 bp (0.01%) 1,282 (0.42%) 905 bp (0.02%) 1,666 (0.54%) 1,376 bp (0.02%) 1,805 (0.57%) 1,084 bp (0.02%) 1,146 (0.43%) 1,370 bp (0.02%) 1,023 (0.37%) 1,069 bp (0.02%) 6,008 (0.45%) 7,358 bp (0.13%)
Salmonella enterica subsp. enterica serovar Enteritidis P125109 709 (0.28%) 991 bp (0.02%) 1,290 (0.43%) 1,333 bp (0.02%) 1,738 (0.56%) 1,313 bp (0.02%) 1,950 (0.62%) 632 bp (0.01%) 1,206 (0.45%) 1,889 bp (0.04%) 1,042 (0.38%) 1,312 bp (0.02%) 6,314 (0.47%) 4,543 bp (0.11%)
Salmonella enterica subsp. enterica serovar Typhimurium D23580 714 (0.29%) 830 bp (0.02%) 1,285 (0.42%) 1,225 bp (0.02%) 1,714 (0.55%) 1,052 bp (0.02%) 1,909 (0.61%) 733 bp (0.02%) 1,183 (0.45%) 1,594 bp (0.03%) 1,050 (0.38%) 1,381 bp (0.02%) 6,190 (0.46%) 4,867 bp (0.10%)
Salmonella enterica serovar Paratyphi C RKS4594 687 (0.28%) 364 bp (0.01%) 1,236 (0.41%) 1,035 bp (0.02%) 1,619 (0.52%) 1,298 bp (0.02%) 1,874 (0.59%) 462 bp (0.01%) 1,116 (0.42%) 1,816 bp (0.04%) 1,000 (0.36%) 996 bp (0.02%) 5,852 (0.43%) 3,744 bp (0.08%)
Salmonella enterica serovar Typhi Ty2 744 (0.30%) 474 bp (0.01%) 1,307 (0.43%) 848 bp (0.02%) 1,682 (0.54%) 1,046 bp (0.02%) 1,898 (0.60%) 256 bp (0.01%) 1,191 (0.45%) 1,555 bp (0.02%) 1,024 (0.37%) 1,334 bp (0.01%) 6,242 (0.46%) 3,489 bp (0.06%)
Shigella boydii Sb227 681 (0.27%) 818 bp (0.02%) 1,241 (0.41%) 1,544 bp (0.03%) 1,613 (0.52%) 676 bp (0.01%) 1,820 (0.58%) 566 bp (0.01%) 1,169 (0.44%) 1,598 bp (0.03%) 1,056 (0.39%) 1,151 bp (0.02%) 6,131 (0.45%) 7,225 bp (0.15%)
S higella dysenteriae Sd197 639 (0.26%) 560 bp (0.01%) 1,226 (0.40%) 482 bp (0.01%) 1,561 (0.50%) 1,135 bp (0.02%) 1,833 (0.58%) 613 bp (0.01%) 1,102 (0.42%) 1,818 bp (0.04%) 1,019 (0.37%) 646 bp (0.01%) 6,082 (0.57%) 7,628 bp (0.18%)
Shigella flexneri 2a 301 647 (0.26%) 248 bp (0.01%) 1,270 (0.42%) 489 bp (0.01%) 1,654 (0.53%) 329 bp (0.01%) 1,848 (0.59%) 112 bp (0.01%) 1,145 (0.43%) 452 bp (0.01%) 1,026 (0.37%) 967 bp (0.02%) 6,181 (0.46%) 6,211 bp (0.12%)
Shigella sonnei Ss046 697 (0.28%) 663 bp (0.01%) 1,303 (0.43%) 591 bp (0.01%) 1,661 (0.54%) 376 bp (0.01%) 1,884 (0.60%) 438 bp (0.01%) 1,164 (0.44%) 1,297 bp (0.02%) 1,059 (0.39%) 1,030 bp (0.02%) 6,268 (0.47%) 9,630 bp (0.20%)
Streptococcus agalactiae NEM316 713 (0.29%) 1,378 bp (0.05%) 1,295 (0.43%) 1,166 bp (0.05%) 1,692 (0.55%) 4,150 bp (0.18%) 2,134 (0.68%) 3,248 bp (0.14%) 1,149 (0.43%) 3,535 bp (0.16%) 982 (0.36%) 2,585 bp (0.12%) 6,858 (0.51%) 13,756 bp (0.58%)
Streptococcus pyogenes MGAS5005 703 (0.28%) 977 bp (0.05%) 1,218 (0.40%) 1,964 bp (0.11%) 1,619 (0.52%) 2,741 bp (0.15%) 1,997 (0.63%) 2,784 bp (0.15%) 1,086 (0.41%) 2,853 bp (0.16%) 966 (0.35%) 3,039 bp (0.16%) 6,649 (0.49%) 13,704 bp (0.76%)
Vibrio cholerae M66 632 (0.25%) 218 bp (0.01%) 1,122 (0.37%) 675 bp (0.01%) 1,580 (0.51%) 276 bp (0.01%) 1,829 (0.58%) 688 bp (0.01%) 1,106 (0.42%) 595 bp (0.01%) 978 (0.36%) 566 bp (0.01%) 5,888 (0.44%) 2,410 bp (0.05%)
Vibrio fischeri ES114 634 (0.25%) 462 bp (0.01%) 1,134 (0.37%) 0 bp (0%) 1,510 (0.49%) 583 bp (0.01%) 1,782 (0.57%) 512 bp (0.01%) 1,084 (0.41%) 103 bp (0.01%) 921 (0.34%) 1,110 bp (0.02%) 5,925 (0.44%) 533 bp (0.01%)