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Table 1 Classes, functional domains and domain descriptions of the candidate regulators encoded by the genes that are co-regulated with cellulase and/or hemicellulase genes

From: Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production

Class InterPro domain Domain description Candidate regulatory genes
Fungal transcription factors (Zn2-C6 type) IPR001138 Fungal transcriptional regulatory protein, N-terminal 31
IPR007219 Transcription factor, fungi
Transcription factors, basic-leucine zipper type IPR004827 Basic-leucine zipper transcription factor 1
IPR011616 Basic-leucine zipper transcription factor, bZIP-1
Transcription factor, Tcf25 type repressor IPR006994 Transcription factor 25 1
Zinc finger, C2H2 type IPR007087 Zinc finger, C2H2-type 2
Zinc finger, other types IPR002893 Zinc finger, MYND-type 1
IPR000058 Zinc finger, AN1-type 1
IPR002867 Zinc finger, C6HC-type 1
IPR008913 Zinc finger, CHY-type 1
IPR000571 Zinc finger, CCCH-type 1
Chromatin level regulation/remodeling IPR013256 Chromatin SPT2 1
IPR000953 Chromo domain 1
IPR008251 Chromo shadow
IPR000182 GCN5-related N-acetyltransferase 6
IPR013178 Histone H3-K56 acetyltransferase, RTT109 1
IPR001214 SET domain 2
IPR000330 SNF2-related 1
IPR001025 Bromo adjacent homology domain 1
IPR001487 Bromodomain 1
IPR000210 BTB/POZ-like
Protein kinases IPR000719 Protein kinase, catalytic domain 7
IPR011009 Protein kinase-like domain
G protein signaling IPR011021 Arrestin-like, N-terminal 1
IPR011022 Arrestin-like, C-terminal
IPR000832 G protein-coupled reseptor, family 2, secretin-like 1
IPR000342 Regulator of G protein signaling 2
Other regulators IPR000095 PAK-box/P21-Rho-binding
IPR000387 Dual-specific/protein-tyrosine phosphatase, conserved region 1
IPR000791 GPR1/FUN34/yaaH 1
IPR009057 Homeodomain-like 1
IPR001611 Leucine-rich repeat 1
IPR008030 NmrA-like 1
IPR008914 Phosphatidylethanolamine-binding protein 1
IPR012093 Pirin 2
IPR011989 Armadillo-like helical 2
IPR001313 Pumilio RNA-binding repeat
IPR001251 CRAL-TRIO domain 1
IPR005511 Senescence marker protein-30 1
IPR001810 F-box domain, cyclin-like 1
IPR003892 Ubiquitin system component Cue 1
IPR001680 WD40 repeat 4
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Biotechnology for Biofuels

ISSN: 1754-6834

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