Table 1 Classes, functional domains and domain descriptions of the candidate regulators encoded by the genes that are co-regulated with cellulase and/or hemicellulase genes
Class | InterPro domain | Domain description | Candidate regulatory genes |
|---|---|---|---|
Fungal transcription factors (Zn2-C6 type) | IPR001138 | Fungal transcriptional regulatory protein, N-terminal | 31 |
IPR007219 | Transcription factor, fungi | ||
Transcription factors, basic-leucine zipper type | IPR004827 | Basic-leucine zipper transcription factor | 1 |
IPR011616 | Basic-leucine zipper transcription factor, bZIP-1 | ||
Transcription factor, Tcf25 type repressor | IPR006994 | Transcription factor 25 | 1 |
Zinc finger, C2H2 type | IPR007087 | Zinc finger, C2H2-type | 2 |
Zinc finger, other types | IPR002893 | Zinc finger, MYND-type | 1 |
IPR000058 | Zinc finger, AN1-type | 1 | |
IPR002867 | Zinc finger, C6HC-type | 1 | |
IPR008913 | Zinc finger, CHY-type | 1 | |
IPR000571 | Zinc finger, CCCH-type | 1 | |
Chromatin level regulation/remodeling | IPR013256 | Chromatin SPT2 | 1 |
IPR000953 | Chromo domain | 1 | |
IPR008251 | Chromo shadow | ||
IPR000182 | GCN5-related N-acetyltransferase | 6 | |
IPR013178 | Histone H3-K56 acetyltransferase, RTT109 | 1 | |
IPR001214 | SET domain | 2 | |
IPR000330 | SNF2-related | 1 | |
IPR001025 | Bromo adjacent homology domain | 1 | |
IPR001487 | Bromodomain | 1 | |
IPR000210 | BTB/POZ-like | ||
Protein kinases | IPR000719 | Protein kinase, catalytic domain | 7 |
IPR011009 | Protein kinase-like domain | ||
G protein signaling | IPR011021 | Arrestin-like, N-terminal | 1 |
IPR011022 | Arrestin-like, C-terminal | ||
IPR000832 | G protein-coupled reseptor, family 2, secretin-like | 1 | |
IPR000342 | Regulator of G protein signaling | 2 | |
Other regulators | IPR000095 | PAK-box/P21-Rho-binding | |
IPR000387 | Dual-specific/protein-tyrosine phosphatase, conserved region | 1 | |
IPR000791 | GPR1/FUN34/yaaH | 1 | |
IPR009057 | Homeodomain-like | 1 | |
IPR001611 | Leucine-rich repeat | 1 | |
IPR008030 | NmrA-like | 1 | |
IPR008914 | Phosphatidylethanolamine-binding protein | 1 | |
IPR012093 | Pirin | 2 | |
IPR011989 | Armadillo-like helical | 2 | |
IPR001313 | Pumilio RNA-binding repeat | ||
IPR001251 | CRAL-TRIO domain | 1 | |
IPR005511 | Senescence marker protein-30 | 1 | |
IPR001810 | F-box domain, cyclin-like | 1 | |
IPR003892 | Ubiquitin system component Cue | 1 | |
IPR001680 | WD40 repeat | 4 |