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Table 4 Genera that express >50% of lignocellulolytic glycoside hydrolases in enriched thermophilic and mesophilic communities

From: Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw

  Thermophilic community Mesophilic community
GH family Genus (Phylum) % of transcripts for GH family Genus (Phylum) % of transcripts for GH family
1 Micromonospora (A) 83.4 Leifsonia (A) 23.7
Cupriavidus (P) 12.1
Bordetella (P) 11.4
Pseudoxanthomonas (P) 8.9
3 Micromonospora (A) 36.1 Chyseobacterium (B) 35.2
Pseudoxanthomonas (P) 21.0 Pseudoxanthomonas (P) 23.9
5 Micromonospora (A) 57.7 Niastella (B) 16.8
Pseudoxanthomonas (P) 16.5
Brevibacillus (F) 15.8
Bordetella (P) 10.9
6 Micromonospora (A) 93.8 Planctomyces (Pl) 35.3
Sphingobium (P) 33.9
7 Chaetomium (As) 70.2 n/a  
8 Pseudoxanthomonas (P) 44.7 Pseudoxanthomonas (P) 69.3
Thermobacillus (F) 40.0
9 Micromonospora (A) 79.8 Pseudoxanthomonas (P) 45.8
Bordetella (P) 20.8
10 Micromonospora (A) 65.5 Pseudoxanthomonas (P) 25.1
Niastella (B) 20.1
Paenibacillus (F) 17.4
11 Micromonospora (A) 94.7 Pseudoxanthomonas (P) 47.7
Niastella (B) 25.1
12 Micromonospora (A) 86.7 Leifsonia (A) 73.6
16 Chaeotomium (As) 27.1 Bordetella (P) 29.2
Micromonospora (A) 18.5 Niastella (B) 18.7
Niastella (B) 17.8 Chryseobacterium (B) 17.0
26 Niastella (B) 65.2 Leifsonia (A) 24.9
Niastella (B) 21.1
Brevibacillus (F) 15.3
43 Niabella (B) 38.9 Pseudoxanthomonas (P) 34.3
Thermobacillus (F) 23.9 Bordetella (P) 18.7
45 n/a   Brevibacillus (F) 100
48 Micromonospora (A) 100 Bordetella (P) 43.1
Sphingopyxis (P) 22.1
61 Chaetomium (As) 49.0 Pseudoxanthomons (P) 100
43.2
Candidatus Solibacter (Ac)
62 Micromonospora (A) 46.0 Niastella (B) 100
Mycobacterium (A) 40.5
67 Niabella (B) 39.5 Pseudoxanthomonas (P) 50.7
Micromonospora (A) 26.9
  1. Phyla are indicated as A, Actinobacteria; Ac, Acidobacteria; As, Ascomycota; B, Bacteroidetes; F, Firmicutes; P, Proteobacteria; Pl, Planctomycetes.