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Table 4 Genera that express >50% of lignocellulolytic glycoside hydrolases in enriched thermophilic and mesophilic communities

From: Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw

 

Thermophilic community

Mesophilic community

GH family

Genus (Phylum)

% of transcripts for GH family

Genus (Phylum)

% of transcripts for GH family

1

Micromonospora (A)

83.4

Leifsonia (A)

23.7

Cupriavidus (P)

12.1

Bordetella (P)

11.4

Pseudoxanthomonas (P)

8.9

3

Micromonospora (A)

36.1

Chyseobacterium (B)

35.2

Pseudoxanthomonas (P)

21.0

Pseudoxanthomonas (P)

23.9

5

Micromonospora (A)

57.7

Niastella (B)

16.8

Pseudoxanthomonas (P)

16.5

Brevibacillus (F)

15.8

Bordetella (P)

10.9

6

Micromonospora (A)

93.8

Planctomyces (Pl)

35.3

Sphingobium (P)

33.9

7

Chaetomium (As)

70.2

n/a

 

8

Pseudoxanthomonas (P)

44.7

Pseudoxanthomonas (P)

69.3

Thermobacillus (F)

40.0

9

Micromonospora (A)

79.8

Pseudoxanthomonas (P)

45.8

Bordetella (P)

20.8

10

Micromonospora (A)

65.5

Pseudoxanthomonas (P)

25.1

Niastella (B)

20.1

Paenibacillus (F)

17.4

11

Micromonospora (A)

94.7

Pseudoxanthomonas (P)

47.7

Niastella (B)

25.1

12

Micromonospora (A)

86.7

Leifsonia (A)

73.6

16

Chaeotomium (As)

27.1

Bordetella (P)

29.2

Micromonospora (A)

18.5

Niastella (B)

18.7

Niastella (B)

17.8

Chryseobacterium (B)

17.0

26

Niastella (B)

65.2

Leifsonia (A)

24.9

Niastella (B)

21.1

Brevibacillus (F)

15.3

43

Niabella (B)

38.9

Pseudoxanthomonas (P)

34.3

Thermobacillus (F)

23.9

Bordetella (P)

18.7

45

n/a

 

Brevibacillus (F)

100

48

Micromonospora (A)

100

Bordetella (P)

43.1

Sphingopyxis (P)

22.1

61

Chaetomium (As)

49.0

Pseudoxanthomons (P)

100

43.2

Candidatus Solibacter (Ac)

62

Micromonospora (A)

46.0

Niastella (B)

100

Mycobacterium (A)

40.5

67

Niabella (B)

39.5

Pseudoxanthomonas (P)

50.7

Micromonospora (A)

26.9

  1. Phyla are indicated as A, Actinobacteria; Ac, Acidobacteria; As, Ascomycota; B, Bacteroidetes; F, Firmicutes; P, Proteobacteria; Pl, Planctomycetes.