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Table 5 Strains and plasmids

From: Physiological roles of pyruvate ferredoxin oxidoreductase and pyruvate formate-lyase in Thermoanaerobacterium saccharolyticum JW/SL-YS485

Strain or plasmid

Description

Accession number

References

Strains

 E. coli

  DH5α

E. coli cloning strains

N/A

New England Biolabs

 T. saccharolyticum

 

  LL1025

Wild-type strain

SRA234880

[32]

  LL1040 (aka ALK2)

High ethanol-producing strain, Kanr, Ermr

N/A

[2]

  LL1049 (aka M1442)

High ethanol-producing strain

SRA233073

[4]

  LL1139

LL1025 ΔpforA ::Kanr, colony 1

SRA234882

This study

  LL1140

LL1025 ΔpforA ::Kanr, colony 2

SRA233066

This study

  LL1141

Adapted LL1139

SRA234883

This study

  LL1142

Adapted LL1140

SRA234884

This study

  LL1155

LL1025 ΔpforD ::‏ Kanr,

N/A

This study

  LL1156

LL1025 ΔpforB :: ‏Kanr,

N/A

This study

  LL1157

LL1025 ΔpforF :: ‏Kanr,

N/A

This study

  LL1159

LL1049 ΔpforA :: ‏Kanr,

N/A

This study

  LL1164

LL1025 Δpfl :: Kanr, colony 1

SRA233080

This study

  LL1170

LL1025 Δpfl :: Kanr, colony 2

SRA233074

This study

  LL1178

LL1141 Δpfl :: Ermr

SRA234885

This study

Plasmids

 pMU433

Cloning vector pta/ack, Kanr

 

[33]

 pZJ13

pforA knockout, Kanr, pta/ack

KP057684

This study

 pZJ15

pforB knockout, Kanr, pta/ack

KP057685

This study

 pZJ16

pforD knockout, Kanr, pta/ack

KP057686

This study

 pZJ17

pforF knockout, Kanr, pta/ack

KP057687

This study

 pZJ20

pfl knockout, Kanr, pta/ack

KP057688

This study

 pZJ23

Cloning vector Ermr, Ampr

KP057689

This study

 pZJ25

pfl knockout, Ermr, Ampr

KP057690

This study

  1. Note, accession numbers for strains refer to raw resequencing data from the JGI Sequence Read Archive. Accession numbers for plasmids refer to the Genbank database.
  2. Kanr kanamycin resistant, Ermr erythromycin resistant, Ampr ampicillin resistant, pta/ack is a negative selective marker.