Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

Fang, Lei; Sun, Deying; Xu, Zhenyu; He, Jing; Qi, Shuyuan; Chen, Xin; Chew, Wee; Liu, Jianhua

doi:10.1186/s13068-015-0307-y

Biotechnology for Biofuels and Bioproducts

Table 3 List of the top 30 most abundant ESTs in log-phase B. braunii 779 cells

From: Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

Rk^a	EST_ID^b	BH_ID^c	FPKM^d	Description^e
1	c72167_g1_i4	ChlNC64A_1\|59790	12,471.445	Photosynthesis, light harvesting
2	c72167_g1_i8	Coc_C169_1\|58975	10,031.55	Photosynthesis, light harvesting
3	c72102_g4_i5	Coc_C169_1\|27246	7,119.695	Photosynthesis, light harvesting
4	c72167_g1_i2	Coc_C169_1\|58975	6,831.27	Photosynthesis, light harvesting
5	c72167_g1_i6	Coc_C169_1\|27246	6,731.515	Photosynthesis, light harvesting
6	c72102_g4_i4	Coc_C169_1\|58975	4,540.985	Photosynthesis, light harvesting
7	c72167_g1_i7	Coc_C169_1\|27246	3,366.845	Photosynthesis, light harvesting
8	c72102_g4_i1	Coc_C169_1\|58975	2,639.815	Photosynthesis, light harvesting
9	c68174_g2_i1	Coc_C169_1\|30477	2,360.575	60S ribosomal protein L23
10	c68658_g2_i1	Coc_C169_1\|35121	2,110.295	Photosynthesis, light harvesting
11	c57826_g1_i1	Coc_C169_1\|44136	1,790.37	Photosynthesis, light harvesting
12	c58876_g1_i1	Coc_C169_1\|28488	1,713.8	Photosynthesis, light harvesting
13	c54674_g1_i1	Coc_C169_1\|64185	1,710.555	Photosynthesis, light harvesting
14	c72326_g1_i2	Coc_C169_1\|67011	1,573.705	Photosynthesis, light harvesting
15	c72522_g1_i1	Coc_C169_1\|34109	1,538.055	Fructose-biphosphate aldolase
16	c70416_g1_i1	Coc_C169_1\|27513	1,432.875	Translation elongation factor EF-1
17	c65010_g1_i1	Coc_C169_1\|19247	1,314.1	Photosynthesis, light harvesting
18	c62135_g1_i1	Chlre4\|184775	1,184.59	Photosynthesis, light harvesting
19	c72592_g1_i1	Coc_C169_1\|35576	1,170.825	Enolase
20	c71666_g1_i1	Chlre4\|140045	1,082.22	Ubiquitin and ubiquitin-like proteins
21	c58350_g1_i1	Coc_C169_1\|28397	1,073.435	60S ribosomal protein L35
22	c72102_g5_i1	Coc_C169_1\|28488	977.63	Photosynthesis, light harvesting
23	c70207_g1_i2	ChlNC64A_1\|59626	859.85	Photosynthesis, light harvesting
24	c70122_g2_i2	Coc_C169_1\|53355	839.985	Glyceraldehyde 3-phosphate dehydrogenase
25	c69841_g1_i1	Coc_C169_1\|25284	823.07	Photosynthesis, light harvesting
26	c69841_g1_i3	Coc_C169_1\|25284	818.15	Photosynthesis, light harvesting
27	c57090_g1_i1	Coc_C169_1\|26429	790.785	60S ribosomal protein L44
28	c68918_g1_i1	Coc_C169_1\|37969	772.455	Photosynthesis, light harvesting
29	c61023_g1_i1	Coc_C169_1\|34169	689.075	60S ribosomal protein L30
30	c68918_g1_i2	Coc_C169_1\|37969	676.53	Photosynthesis, light harvesting

^aRk stands for rank based on average level of FPKM.
^bEST_ID for ID of the B. braunii 779 ESTs.
^cBH_ID for EST’s best-hit consistent of species and protein ID.
^dFPKM for average level of individual ESTs.
^eDescription is based on GO annotations.

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ISSN: 2731-3654

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