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Table 4 Strains, plasmids, and oligonucleotide primers used in this study

From: A novel biocatalyst for efficient production of 2-oxo-carboxylates using glycerol as the cost-effective carbon source

Name

Relevant characteristic

Reference

Strains

 P. putida KT2440

Wild-type; capable of dl-lactate utilizing

ATCC

 P. putida KT2440 (ΔlldR)

lldR deletion strain of P. putida KT2440

This study

 P. putida KT2440/pBSPPcGm-vgb

P. putida KT2440 harboring pBSPPcGm-vgb; Gmr

This study

 P. putida KT2440 (ΔlldR)/pBSPPcGm-vgb

P. putida KT2440 (ΔlldR) harboring pBSPPcGm-vgb; Gmr

This study

 E. coli DH5α

λ− ϕ80lacZ∆M15 ∆ (lacZYA-argF) U169 recA1 endA1 hsdR17 (r −K , m +K ) supE44 thi-1 gyrA relA1; used for gene clone

Invitrogen

 E. coli BL21 (pET28b-RgDAAO-VHb)

E. coli BL21 harboring pET28b-RgDAAO-VHb; Kmr

Professor Sheng Yanga

Plasmids

 pK18mobsacB

Allelic exchange vector, oriColE1 Mob+, lacZα, sacB; Kmr

[36]

 pKLR

A fragment from KT2440 genome containing whole length of lldR was inserted in pK18mobsacB; Kmr

This study

 pKSR

pKLR was completely digested by pstI, and then the large fragment was self-ligated; as a result, only partial length of lldR was inserted into pK18mobsacB; Kmr

This study

 pBSPPcGm

A constitutive vector with high expression strengths; Gmr

[44]

 pET28b-RgDAAO-VHb

pET28b containing Rg-daao gene and vgb gene,T7 promoter; Kmr

Professor Sheng Yanga

 pBSPPcGm-vgb

pBSPPcGm containing gene vgb; Gmr

This study

 Primers

Sequences (5′ → 3′) and properties

 

 lldRk.f

GAATTCATGGTTTTTGATCAGGTACGC (EcoRI)

This study

 lldRk.r

AAGCTTTCAGCGCCCGCTGCGCCGCTCT (HindIII)

This study

 vgb.f

CCCAAGCTTAGGAGACAGTAATGTTAGACCAGCAAACCATTA (HindIII)

This study

 vgb.r

CGCGGATCCTTCAACCGCTTGAGCGTA (BamHI)

This study

  1. ATCC American Type Culture Collection
  2. aForm Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences