Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A

Table 1 General statistics of RNA-Seq output

Condition	Total reads	Total bases	Genome coverage^a	cDNA coverage^b	Assembled transcript coverage^c	R ² value^c
Glucose	81,468,482	12,220,272,300	121.59	590.27	349.15	0.89
Alfalfa	58,612,544	8,791,881,600	87.48	424.67	251.20	0.99
Energy cane	93,381,914	14,007,287,100	139.38	676.58	400.21	0.99
Corn stover	100,842,114	15,126,317,100	150.51	730.63	432.18	0.99
Sorghum	141,241,616	21,186,242,400	210.81	1023.34	605.32	0.99
Total reads/coverage	468,159,494	70,223,924,100	698.75	3391.97	2038.05	0.99

^aGenome coverage based on an estimated 100.5 Mb genome size [18]
^bcDNA coverage is based on a 20.76 % genome coding density [18]
^cAssembled transcript coverage is based on the total assembled transcript size (35.0 Mb)

ISSN: 2731-3654