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Table 1 General statistics of RNA-Seq output

From: Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A

Condition Total reads Total bases Genome coveragea cDNA coverageb Assembled transcript coveragec R 2 valuec
Glucose 81,468,482 12,220,272,300 121.59 590.27 349.15 0.89
Alfalfa 58,612,544 8,791,881,600 87.48 424.67 251.20 0.99
Energy cane 93,381,914 14,007,287,100 139.38 676.58 400.21 0.99
Corn stover 100,842,114 15,126,317,100 150.51 730.63 432.18 0.99
Sorghum 141,241,616 21,186,242,400 210.81 1023.34 605.32 0.99
Total reads/coverage 468,159,494 70,223,924,100 698.75 3391.97 2038.05 0.99
  1. aGenome coverage based on an estimated 100.5 Mb genome size [18]
  2. bcDNA coverage is based on a 20.76 % genome coding density [18]
  3. cAssembled transcript coverage is based on the total assembled transcript size (35.0 Mb)