|
Up-regulation
|
|
CA_C0102
|
O-acetylhomoserine sulfhydrylase
|
28.70
|
20.49
|
CymR
|
|
CA_C0103
|
Adenylylsulfate kinase
|
32.55
|
22.06
|
CymR
|
|
CA_C0104
|
Adenylylsulfate reductase, subunit A
|
48.44
|
28.89
|
CymR
|
|
CA_C0105
|
Ferredoxin
|
30.78
|
21.84
|
CymR
|
|
CA_C0106
|
ABC-type probable sulfate transporter, periplasmic binding protein
|
26.09
|
14.54
|
CymR
|
|
CA_C0107
|
ABC-type sulfate transporter, ATPase component
|
22.86
|
13.03
|
CymR
|
|
CA_C0108
|
ABC-type probable sulfate transporter, permease protein
|
35.38
|
19.05
|
CymR
|
|
CA_C0109
|
Sulfate adenylate transferase, CysD subfamily
|
42.53
|
26.82
|
CymR
|
|
CA_C0110
|
GTPase, sulfate adenylate transferase subunit 1
|
54.78
|
42.48
|
CymR
|
|
CA_C0117
|
Chemotaxis protein cheY homolog
|
8.34
|
6.69
| |
|
CA_C0118
|
Chemotaxis protein cheA
|
11.00
|
8.24
| |
|
CA_C0119
|
Chemotaxis protein cheW
|
13.83
|
9.52
| |
|
CA_C0120
|
Membrane-associated methyl-accepting chemotaxis protein with HAMP domain
|
6.93
|
5.29
| |
|
CA_C0878
|
Amino acid ABC transporter permease component
|
5.61
|
4.04
|
CymR
|
|
CA_C0879
|
ABC-type polar amino acid transport system, ATPase component
|
8.29
|
5.60
|
CymR
|
|
CA_C0880
|
Periplasmic amino acid binding protein
|
9.50
|
6.50
|
CymR
|
|
CA_C0930
|
Cystathionine gamma-synthase
|
4.58
|
4.72
|
CymR
|
|
CA_C1392
|
Glutamine phosphoribosylpyrophosphate amidotransferase
|
4.20
|
4.47
| |
|
CA_C1394
|
Folate-dependent phosphoribosylglycinamide formyltransferase
|
4.11
|
4.57
| |
|
CA_C2072
|
Stage IV sporulation protein B, SpoIVB
|
∞
|
∞
| |
|
CA_C2235
|
Cysteine synthase/cystathionine beta-synthase, CysK
|
8.27
|
7.17
|
CymR
|
|
CA_C2236
|
Uncharacterized conserved protein of YjeB/RRF2 family
|
4.29
|
4.06
|
CymR encoding gene
|
|
CA_C2241
|
Cation transport P-type ATPase
|
7.92
|
7.62
| |
|
CA_C2242
|
Predicted transcriptional regulator, arsE family
|
5.01
|
5.22
| |
|
CA_C2521
|
Hypothetical protein, CF-41 family
|
4.33
|
5.70
| |
|
CA_C2533
|
Protein containing ChW-repeats
|
∞
|
∞
| |
|
CA_C2816
|
Hypothetical protein, CF-17 family
|
6.00
|
11.20
| |
|
CA_C3049
|
Glycosyltransferase
|
4.79
|
7.42
| |
|
CA_C3050
|
AMSJ/WSAK-related protein, possibly involved in exopolysaccharide biosynthesis
|
4.70
|
8.25
| |
|
CA_C3051
|
Glycosyltransferase
|
5.16
|
9.60
| |
|
CA_C3052
|
Glycosyltransferase
|
5.59
|
9.91
| |
|
CA_C3053
|
Histidinol phosphatase-related enzyme
|
7.03
|
10.94
| |
|
CA_C3054
|
Phosphoheptose isomerase
|
6.69
|
11.37
| |
|
CA_C3055
|
Sugar kinase
|
5.90
|
10.87
| |
|
CA_C3056
|
Nucleoside-diphosphate-sugar pyrophosphorylase
|
6.37
|
11.28
| |
|
CA_C3057
|
Glycosyltransferase
|
12.36
|
11.92
| |
|
CA_C3058
|
Mannose-1-phosphate guanylyltransferase
|
9.94
|
11.59
| |
|
CA_C3059
|
Sugar transferases
|
13.47
|
12.63
| |
|
CA_C3325
|
Periplasmic amino acid binding protein
|
18.24
|
10.68
|
CymR
|
|
CA_C3326
|
Amino acid ABC-type transporter, permease component
|
19.82
|
11.79
|
CymR
|
|
CA_C3327
|
Amino acid ABC-type transporter, ATPase component
|
28.33
|
16.73
|
CymR
|
|
CA_C3461
|
Hypothetical protein
|
4.52
|
16.79
| |
|
CA_C3556
|
Probable S-layer protein;
|
4.18
|
10.41
| |
|
CA_C3636
|
Oligopeptide ABC transporter, ATPase component
|
4.23
|
4.68
| |
|
CA_P0029
|
Permease MDR-related
|
∞
|
∞
| |
|
CA_P0030
|
Isochorismatase
|
385.91
|
81.89
| |
|
CA_P0031
|
Transcriptional activator HLYU, HTH of ArsR family
|
46.17
|
10.93
| |
|
CA_P0117
|
Possible beta-xylosidase diverged, family 5/39 of glycosyl hydrolases and alpha-amylase C (Greek key) C-terminal domain
|
56.53
|
4.94
| |
|
CA_P0118
|
Possible xylan degradation enzyme (glycosyl hydrolase family 30-like domain and Ricin B-like domain)
|
54.97
|
5.22
| |
|
CA_P0119
|
Possible xylan degradation enzyme (glycosyl hydrolase family 30-like domain and Ricin B-like domain)
|
46.44
|
4.23
| |
|
Down-regulation
|
|
CA_C0078
|
Accessory gene regulator protein B
|
0.04
|
0.00
| |
|
CA_C0079
|
Hypothetical protein
|
0.00
|
0.00
| |
|
CA_C0082
|
Predicted membrane protein
|
0.02
|
0.00
| |
|
CA_C0310
|
Regulators of stationary/sporulation gene expression, abrB B.subtilis ortholog
|
0.15
|
0.23
| |
|
CA_C0381
|
Methyl-accepting chemotaxis protein
|
0.18
|
0.13
| |
|
CA_C0437
|
Sensory transduction histidine kinase
|
0.15
|
0.23
| |
|
CA_C0537
|
Acetylxylan esterase, acyl-CoA esterase or GDSL lipase family, strong similarity to C-terminal region of endoglucanase E precursor
|
0.15
|
0.10
| |
|
CA_C0542
|
Methyl-accepting chemotaxis protein
|
0.21
|
0.08
| |
|
CA_C0658
|
Fe-S oxidoreductase
|
0.24
|
0.00
| |
|
CA_C0660
|
Hypothetical protein, CF-26 family
|
0.17
|
0.08
|
BuOH
|
|
CA_C0814
|
3-oxoacyl-[acyl-carrier-protein] synthase III
|
0.11
|
0.02
|
BuOH
|
|
CA_C0815
|
Methyl-accepting chemotaxis protein
|
0.13
|
0.04
|
BuOH
|
|
CA_C0816
|
Lipase-esterase-related protein
|
0.17
|
0.04
|
BuOH
|
|
CA_C1010
|
Predicted phosphohydrolase, Icc family
|
0.21
|
0.04
|
BuOH
|
|
CA_C1022
|
Thioesterase II of alpha/beta hydrolase superfamily
|
0.22
|
0.11
| |
|
CA_C1078
|
Predicted phosphohydrolase, Icc family
|
0.17
|
0.04
|
BuOH
|
|
CA_C1079
|
Uncharacterized protein, related to enterotoxins of other Clostridiales
|
0.15
|
0.05
| |
|
CA_C1080
|
Uncharacterized protein, probably surface-located
|
0.11
|
0.01
| |
|
CA_C1081
|
Uncharacterized protein, probably surface-located
|
0.13
|
0.01
| |
|
CA_C1532
|
Protein containing ChW-repeats
|
0.22
|
0.08
| |
|
CA_C1766
|
Predicted sigma factor
|
0.19
|
0.00
| |
|
CA_C1775
|
Predicted membrane protein
|
0.16
|
0.05
| |
|
CA_C1868
|
Uncharacterized secreted protein, homolog YXKC Bacillus subtilis
|
0.22
|
0.18
| |
|
CA_C1989
|
ABC-type iron (III) transport system, ATPase component
|
0.18
|
0.11
|
BuOH
|
|
CA_C1991
|
Uncharacterized protein, YIIM family
|
0.23
|
0.10
|
BuOH
|
|
CA_C1993
|
Molybdenum cofactor biosynthesis enzyme MoaA, Fe-S oxidoreductase
|
0.23
|
0.18
|
BuOH
|
|
CA_C1994
|
Molybdopterin biosynthesis enzyme, MoaB
|
0.22
|
0.11
|
BuOH
|
|
CA_C1996
|
Hypothetical protein
|
0.19
|
0.08
|
BuOH
|
|
CA_C1997
|
Predicted glycosyltransferase
|
0.19
|
0.07
|
BuOH
|
|
CA_C1998
|
ABC-type transport system, ATPase component
|
0.19
|
0.07
|
BuOH
|
|
CA_C1999
|
Uncharacterized protein related to hypothetical protein Cj1507c from Campylobacter jejuni
|
0.20
|
0.07
|
BuOH
|
|
CA_C2000
|
Indolepyruvate ferredoxin oxidoreductase, subunit beta
|
0.19
|
0.06
|
BuOH
|
|
CA_C2001
|
Indolepyruvate ferredoxin oxidoreductase, subunit alpha
|
0.13
|
0.04
|
BuOH
|
|
CA_C2002
|
Predicted iron-sulfur flavoprotein
|
0.16
|
0.05
|
BuOH
|
|
CA_C2003
|
Predicted permease
|
0.16
|
0.08
|
BuOH
|
|
CA_C2004
|
Siderophore/Surfactin synthetase-related protein
|
0.10
|
0.04
|
BuOH
|
|
CA_C2005
|
Siderophore/Surfactin synthetase-related protein
|
0.12
|
0.05
|
BuOH
|
|
CA_C2006
|
Enzyme of siderophore/surfactin biosynthesis
|
0.15
|
0.07
|
BuOH
|
|
CA_C2007
|
Predicted glycosyltransferase
|
0.09
|
0.03
|
BuOH
|
|
CA_C2008
|
3-oxoacyl-(acyl-carrier-protein) synthase
|
0.11
|
0.04
|
BuOH
|
|
CA_C2009
|
3-Hydroxyacyl-CoA dehydrogenase
|
0.10
|
0.03
|
BuOH
|
|
CA_C2010
|
Predicted Fe-S oxidoreductase
|
0.09
|
0.03
|
BuOH
|
|
CA_C2011
|
Possible 3-oxoacyl-[acyl-carrier-protein] synthase III
|
0.12
|
0.03
|
BuOH
|
|
CA_C2012
|
Enoyl-CoA hydratase
|
0.12
|
0.04
|
BuOH
|
|
CA_C2013
|
Hypothetical protein
|
0.12
|
0.03
|
BuOH
|
|
CA_C2014
|
Predicted esterase
|
0.12
|
0.02
|
BuOH
|
|
CA_C2015
|
Hypothetical protein
|
0.15
|
0.04
|
BuOH
|
|
CA_C2016
|
Enoyl-CoA hydratase
|
0.12
|
0.02
|
BuOH
|
|
CA_C2017
|
Acyl carrier protein
|
0.15
|
0.03
|
BuOH
|
|
CA_C2018
|
Aldehyde:ferredoxin oxidoreductase
|
0.12
|
0.03
|
BuOH
|
|
CA_C2019
|
Malonyl CoA-acyl carrier protein transacylase
|
0.12
|
0.02
|
BuOH
|
|
CA_C2020
|
Molybdopterin biosynthesis enzyme, MoeA, fused to molybdopterin-binding domain
|
0.20
|
0.07
| |
|
CA_C2021
|
Molybdopterin biosynthesis enzyme, MoeA (short form)
|
0.24
|
0.06
| |
|
CA_C2023
|
Membrane protein, related to copy number protein COP from Clostridium perfringens plasmid pIP404 (GI:116,928)
|
0.22
|
0.12
| |
|
CA_C2026
|
Predicted flavodoxin
|
0.20
|
0.09
| |
|
CA_C2107
|
Contains cell adhesion domain
|
0.20
|
0.08
| |
|
CA_C2293
|
Hypothetical secreted protein
|
0.13
|
0.10
| |
|
CA_C2581
|
6-pyruvoyl-tetrahydropterin synthase-related domain; conserved membrane protein
|
0.24
|
0.11
|
BuOH
|
|
CA_C2663
|
Protein containing cell wall hydrolase domain
|
0.23
|
0.09
| |
|
CA_C2695
|
Diverged Metallo-dependent hydrolase(Zn) of DD-Peptidase family; peptodoglycan-binding domain
|
0.17
|
0.12
|
BuOH
|
|
CA_C2807
|
Endo-1,3(4)-beta-glucanase family 16
|
0.21
|
0.02
| |
|
CA_C2808
|
Beta-lactamase class C domain (PBPX family) containing protein
|
0.20
|
0.04
| |
|
CA_C2809
|
Predicted HD superfamily hydrolase
|
0.14
|
0.02
| |
|
CA_C2810
|
Possible glucoamylase (diverged), 15 family
|
0.14
|
0.01
| |
|
CA_C2944
|
N-terminal domain intergin-like repeats and c-terminal- cell wall-associated hydrolase domain
|
0.23
|
0.06
|
BuOH
|
|
CA_C3070
|
Glycosyltransferase
|
0.21
|
0.04
| |
|
CA_C3071
|
Glycosyltransferase
|
0.21
|
0.03
| |
|
CA_C3072
|
Mannose-1-phosphate guanylyltransferase
|
0.18
|
0.02
| |
|
CA_C3073
|
Sugar transferase involved in lipopolysaccharide synthesis
|
0.23
|
0.03
| |
|
CA_C3085
|
TPR-repeat-containing protein; Cell adhesion domain
|
0.25
|
0.12
| |
|
CA_C3086
|
Protein containing cell adhesion domain
|
0.20
|
0.11
| |
|
CA_C3251
|
Sensory transduction protein containing HD_GYP domain
|
0.20
|
0.11
| |
|
CA_C3264
|
Uncharacterized conserved protein, YTFJ B.subtilis ortholog
|
0.19
|
0.15
|
BuOH
|
|
CA_C3265
|
Predicted membrane protein
|
0.08
|
0.11
| |
|
CA_C3266
|
Hypothetical protein
|
0.07
|
0.07
| |
|
CA_C3267
|
Specialized sigma subunit of RNA polymerase
|
0.15
|
0.16
| |
|
CA_C3280
|
Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats
|
0.23
|
0.14
| |
|
CA_C3408
|
NADH oxidase (two distinct flavin oxidoreductase domains)
|
0.03
|
0.02
| |
|
CA_C3409
|
Transcriptional regulators, LysR family
|
0.02
|
0.01
| |
|
CA_C3412
|
Predicted protein-S-isoprenylcysteine methyltransferase
|
0.22
|
0.06
| |
|
CA_C3422
|
Sugar:proton symporter (possible xylulose)
|
0.05
|
0.03
| |
|
CA_C3423
|
Acetyltransferase (ribosomal protein N-acetylase subfamily)
|
0.04
|
0.03
| |
|
CA_C3612
|
Hypothetical protein
|
0.18
|
0.00
|
BuOH
|
|
CA_P0053
|
Xylanase, glycosyl hydrolase family 10
|
0.24
|
0.09
|
BuOH
|
|
CA_P0054
|
Xylanase/chitin deacetylase family enzyme
|
0.24
|
0.07
|
BuOH
|
|
CA_P0057
|
Putative glycoprotein or S-layer protein
|
0.21
|
0.13
|
BuOH
|
|
CA_P0135
|
Oxidoreductase
|
0.25
|
0.21
| |
|
CA_P0136
|
AstB/chuR/nirj-related protein
|
0.25
|
0.23
| |
|
CA_P0174
|
Membrane protein
|
0.25
|
0.14
| |
