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Table 1 Genomic information of the five Anaerolinea genomes retrieved from thermophilic cellulose-degrading metagenomes

From: Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation

General information TCF-2 TCF-5 TCF-12 TCF-8 TCF-13 A. thermophila UNI-1
IMG Genome ID 2561511051 2561511052 2561511055 2561511056 2561511053 N/A
Total length (Mb) 3.8 3.0 3.7 4.1 4.0 3.5
Scaffolds (n) 55 27 69 51 153 1
Average sequence length (bp) 71,706 11,837 56,472 84,553 27,370 N/A
GC (%) 54 55 53 64 65 54
Estimated completeness based on ESCGa (%) 99.1 98.1 100.0 99.1 100.0 99.1
Estimated redundancy of ESCGs (%) 3.8 1.9 3.7 2.8 3.7 2.8
Genes 3602 3005 3580 3681 3659 3224
Protein-coding genes 3550 2949 3523 3634 3609 3166
rRNA genes (5S/16S/23S) 2/2/0 1/1/1 1/1/1 3/1/0 1/1/0 2/2/2
tRNA gene (n) 43 45 48 41 43 50
Genes with functional prediction (%) 81.4 83.2 80.4 80.8 80.5 53.7
Genes with transcription (%) 27.8 35.4 18.1 1.8 2.8 N/A
Duplicated AAb (n/ %) 814 (22.9 %) 734 (24.9 %) 921 (26.1 %) 932 (10.8 %) 893 (24.7 %) 757 (23.9 %)
  1. N/A data not available
  2. a Completeness estimation based on 107 conserved single-copy genes, named as essential single-copy genes (ESCGs) of >95 % complete bacterial genomes [13]
  3. b Putative duplication among amino acid (AA) sequences within each chromosome (based on BLASTP bitscore ≥70, similarity ≥30 over at least 70 % of the query length [66])
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