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Table 2 Stages of Camelina seed development and RNA-Seq data sets

From: Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

  Cs-14 (10–15 DAF) Cs-21 (16–21 DAF)
  Bio Rep 1 Bio Rep 2 Bio Rep 3 Mean ± SD Bio Rep 1 Bio Rep 2 Bio Rep 3 Mean ± SD
Number of sequence reads 53.0 M 54.8 M 78.9 M 62.23 ± 14.46 62.0 M 61.7 M 46.3 M 56.6 ± 8.9
Number of reads after trimming 52.0 M 53.7 M 72.5 M 59.40 ± 11.37 60.7 M 60.5 M 45.4 M 55.5 ± 8.7
Reads mapped in pairs 44.8 M 45.6 M 67.3 M 52.57 ± 12.76 50.7 M 51.1 M 38.6 M 46.8 ± 7.1
Reads mapped in broken pairs 5.9 M 6.7 M 8.4 M 7.00 ± 1.27 8.4 M 7.9 M 5.8 M 7.36 ± 1.3
Reads not mapped 210,281 241,410 372,878 274,856 ± 86,304 319,246 286,780 184,244 263,416 ± 70,466
  1. Shown are the two stages of Camelina seed development used for RNA-Seq. The number of processed reads obtained from three biological replicates at different levels of data analysis of RNA sequencing (in millions M)
  2. DAF days after flowering; SD standard deviation