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Table 1 Crystallographic data collection and refinement statistics

From: Structural and functional characterization of a highly stable endo-β-1,4-xylanase from Fusarium oxysporum and its development as an efficient immobilized biocatalyst

PDB code

FoXyl2

FoXyl2/MBX

5JRM

5JRN

Synchrotron source

SOLEIL/PX 2A

ALBA/XALOC

Data collection

Wavelength

0.9801

0.9801

Resolution range (Å)

29.65–1.56 (1.616–1.56)

48.75–2.84 (2.94–2.84)

Space group

P 21 21 2

P 21 21 2

Unit cell (Å,º)

105.2, 35.9, 48.3, 90, 90, 90

105.7, 36.1, 48.7, 90, 90,90

Total reflections

187,439 (17,857)

44,904 (4368)

Unique reflections

26,596 (2559)

4766 (450)

Multiplicity

7.0 (7.1)

9.1 (8.7)

Completeness (%)

99 (97)

100 (100)

Mean I/σ(I)

13.91 (1.89)

12.96 (3.73)

Wilson B-factor

16.52

35.89

R-merge

0.099 (0.901)

0.252 (0.884)

R-meansa

0.108 (0.972)

0.266 (0.930)

CC1/2 b

0.998 (0.607)

0.989 (0.706)

CC*c

0.999 (0.869)

0.997 (0.930)

Refinement

Reflections used in refinement

26,593 (2559)

4760 (449)

Reflections used for Rfree

1338 (115)

239 (23)

Rwork

0.186 (0.340)

0.209 (0.329)

Rfree

0.234 (0.345)

0.227 (0.441)

CCwork

0.968 (0.609)

0.938 (0.725)

CCfree

0.941 (0.707)

0.922 (0.660)

Number of non-H atoms

1722

1547

 Macromolecules

1535

1473

 Ligands

21

53

Protein residues

189

189

RMS(bonds) (Å)

0.007

0.005

RMS(angles) (º)

1.12

0.93

Ramachandran favored (%)

95.5

95.2

Ramachandran allowed (%)

4.0

4.8

Ramachandran outliers (%)

0.5

0.5

Rotamer outliers (%)

0.6

0.0

Clashscore

2.00

7.48

Average B-factor (Å2)

24.35

38.35

 Macromolecules

22.52

37.19

 Ligands

84.39

72.53

 Solvent

33.65

33.40

  1. aR-means = Σhkl (n/n−1)1/2 Σi|Ii(hkl)−<I(hkl)>|/ΣΣi Ii(hkl); where i is the ith measurement of reflection (hkl) and < I(hkl) > is the average over symmetry-related observations of a unique reflection (hkl)
  2. bCC1/2 is the Pearson correlation coefficient calculated between two random half data sets
  3. cCC* is the CC of the full data set against the true intensities, estimated from CC* = [2 CC1/2/(1 + CC1/2)]1/2