Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

Table 1 Shows the origin of the reactions added to the reaction database

Species	Source	Reactions	% of matched reactions	% of balanced reactions	Selected as representative	Representatives that balance
S. cerevisiae	ymn6.06	1888	96	90	1020	923
A. niger	iMA871	1399	57	95	266	262
A. nidulans	iHD666	1303	85	69	88	72
A. oryzae	iWV1314	2360	93	74	265	235
K. (Pichia) pastoris	iLC915	1423	88	91	237	207
P. stipitis	iSS884	1332	88	92	6	5
P. chrysogenum	iAL1006	1636	83	95	75	67
KEGG reaction	KEGG	9236	93	90	6618	6376
MetaCyc	MetaCyc	11,181	62	90	3145	3054
Total		31,758	77	88	11,720	11,201

A fully resolved reaction is a reaction having all reactants identified by metabolites in the updated database. All representative reactions balance elements other than hydrogen. Reactions that also balance electrons are denoted “reactions that balance"

ISSN: 2731-3654