Table 3 Filtered variant metrics for strains CEN.PK113-7D, JL1, and F3 using strain S288C as a reference genome

VII

C

C

T

C

Lost in backcross

LCS2

Missense

VIII

G

G

A

A

Segregating

GUT1

Missense

IX

CAAAA

CAAAAAA

AAAAA

CAAAAAA

Lost in backcross

RPL34B

Upstream (+1000)

IX

C

A

C

A

Lost in backcross

CST6

Missense

XII

G

T

C

C

Segregating

UBR2

Nonsense

XII

ATGTAT

ATGTAT

AT

ATGTAT

Lost in backcross

ORM2

Downstream (-300)

XIII

GTATGT

GTATGT

GT

GTATGT

Lost in backcross

FAA4

Upstream (+1000)

XV

T

C

T

C

Lost in backcross

YOR034C-A

Missense

XVI

A

A

C

A

Lost in backcross

CAR1

Upstream (+1000)

M

C

G

C

G

Lost in backcross

Intergenic