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Table 3 Upregulated non-carbohydrate-active proteins/enzymes

From: Metaproteomics-guided selection of targeted enzymes for bioprospecting of mixed microbial communities

Spot no. Method No. of peptides Of which unique Score (−10lgP) Database entry by PEAKS DB and SPIDER Name Categorya
18 PEAKS DB
SPIDER
25 20 247.8 Gi|740455585b ABC transporter substrate binding protein, NC, SP (1–21)
50 45 274.5
19 PEAKS DB
SPIDER
43 42 234.4 Gi|740455585b ABC transporter substrate binding protein, NC, SP (1–21)
76 69 251.8
20 PEAKS DB
SPIDER
2 2 110.7 Gi|740455585b ABC transporter substrate binding protein, NC, SP (1–21)
4 4 143.8
21 PEAKS DB
SPIDER
3 3 94.4 Gi|740455585b ABC transporter substrate binding protein, NC, SP (1–21)
5 5 112.9
22 PEAKS DB
SPIDER
4 4 118.8 Gi|503373723d ABC transporter substrate-binding Solute-binding family 1, NC, SP (1–24)
5 5 131.2
23 PEAKS DB
SPIDER
8 7 156.1 Gi|502813980e ABC transporter substrate-binding Solute-binding family 1, TM (weak), SP (1–27)
8 7 156.1
24 PEAKS DB
SPIDER
17 16 197.0 Gi|697632338f Putative outer membrane protein Nutrient binding, NC, SP (1–30)
20 18 203.3
25 PEAKS DB
SPIDER
10 7 209.0 Gi|697632338f Putative outer membrane binding Nutrient binding, NC, SP (1–30)
12 8 214.2
26 PEAKS DB
SPIDER
2 2 56.3 Gi|489614243b
Gi|489608260b
Copper amine oxidase NC, SP (1–32)
2 2 56.3
27 PEAKS DB
SPIDER
13 13 174.0 Gi|489608992b Copper amine oxidase NC, SP (1–22)
27 27 199.9
28 PEAKS DB
SPIDER
2 2 86.2 Gi|489608992b Copper amine oxidase NC, SP (1–22)
6 6 120.3
29 PEAKS DB
SPIDER
9 1 155.7 Gi|489613949b Copper amine oxidase NC, SP (1–24)
11 3 160.6
30 PEAKS DB
SPIDER
3 3 113.6 Gi|489613949b
Gi|500163071b
Copper amine oxidase NC, SP (1–24)
3 3 113.6
31 PEAKS DB
SPIDER
2 2 83.2 Gi|740459505c
Gi|553726325b
Copper amine oxidase NC, SP (1–26)
4 2 100.8
32 PEAKS DB
SPIDER
1 1 76.4 Gi|740459505c Copper amine oxidase NC, SP (1–26)
2 2 94.4
33 PEAKS DB
SPIDER
12 2 184.3 Gi|575090155c Translation elongation factor G Protein synthesis
14 2 186.9
34 PEAKS DB
SPIDER
29 4 167.3 Gi|489609866b
Gi|575090155c
Translation elongation factor G Protein synthesis
36 9 175.8
35 PEAKS DB
SPIDER
4 1 144.6 Gi|575090155c Translation elongation factor G Protein synthesis
5 1 152.6
36 PEAKS DB
SPIDER
50 2 169.2 Gi|740455515c Translation elongation factor Tu Protein synthesis
55 2 169.2
37 PEAKS DB
SPIDER
45 10 241.4 Gi|489611743b Carboxyl transferase Gluconeogenesis, TM (weak)
48 11 244.5
38 PEAKS DB
SPIDER
56 9 278.6 Gi|740456462b Glyceraldehyde-3-phosphate dehydrogenase Glycolysis
62 11 281.2
39 PEAKS DB
SPIDER
33 5 234.6 Gi|740455993c Flagellin Motility
41 5 241.3
  1. aIn CAZy database; GH glycoside hydrolase family no., NC non-cellulosomal, SP signal peptide, signal peptide sequence length in brackets, TM transmembrane
  2. b Ruminiclostridium thermocellum
  3. c Clostridium straminisolvens
  4. d Sphaerochaeta globose
  5. e Aminobacterium colombiense
  6. f Fermentimonas caenicola