Table 3 Functional classification of the proteins identified in the extracellular pool of proteins of T. amestolkiae cultured with several carbon sources
% PSM | ||||
|---|---|---|---|---|
Avicel | Glucose | Slurry | Xylan | |
A—RNA processing and modification | 0.03 | 0.22 | 0.00 | 0.11 |
C—energy production and conversion | 1.48 | 4.90 | 5.44 | 0.11 |
E—amino Acid metabolism and transport | 3.53 | 10.38 | 7.47 | 9.92 |
F—nucleotide metabolism and transport | 0.00 | 1.42 | 0.14 | 1.07 |
G—carbohydrate metabolism and transport | 91.84 | 65.16 | 71.73 | 70.52 |
I—lipid metabolism | 0.62 | 0.17 | 2.02 | 1.53 |
M—cell wall/membrane/envelop biogenesis | 0.00 | 3.61 | 0.89 | 1.13 |
O—post-translational modification. Protein turnover. Chaperone functions | 0.51 | 1.71 | 2.15 | 1.64 |
Q—secondary structure | 0.06 | 0.91 | 0.48 | 1.12 |
R—general functional prediction only | 0.63 | 1.89 | 2.56 | 1.67 |
S—function unknown | 0.37 | 3.71 | 3.16 | 2.31 |
T—signal transduction | 0.40 | 4.86 | 3.42 | 4.03 |