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Table 1 Summary of 22 bacterial and archaeal strains used in this study

From: Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

Species and strain Family Origin Reference for the isolation strategy or strain origin Closest related NCBI GenBank entry with a validly published taxonomic affiliation Similarity of 16S rRNA gene between isolate and GenBank entry (%) NCBI GenBank entry of closest relative
Location of BGP Type of reactor Fed substrate T (°C) of reactor
Latitude Longitude
Bacteria
 Clostridium cellulosi DG5 Clostridiaceae 51.255499 6.396524 Liquid pump/wet fermentation Maize, pig manure, grass 54 [18]b Clostridium cellulosi AS1.1777 98.8 LN881577
 Clostridium sp. N3C 51.255499 6.396524 Liquid pump/wet fermentation Maize, pig manure, grass 54 [18]c Clostridium putrefaciens DSM 1291T 93.0 NR113324
 Clostridium bornimense M2/40T 52.3871 13.0993 Lab-scale UASS/wet fermentation Maize silage, wheat straw 37 [20] Clostridium bornimense M2/40T 100 JQ388596
 Clostridium thermocellum BC1 48.135125 11.581981 Bio-waste compost treatment site close to BGP 60 [18]d Clostridium thermocellum DSM 1237T 99.0 NR074629
 Proteiniborus sp. DW1 Clostridiales incertae sedis 49.512893 7.083068 CSTR, wet fermentation Maize silage, grass, cattle manure 39 [21] Proteiniborus ethanoligenes GWT 96.0 NR044093
 Sporanaerobacter sp. PP17-6a 51.255499 6.396524 Lab-scale CSTR/wet fermentation Maize silage, pig manure, cattle manure 37 This study Sporanaerobacter acetigenes Lup33 91.0 NR025151
 Herbinix hemicellulosilytica T3/55T Lachnospiraceae 51.255499 6.396524 Liquid pump/wet fermentation Maize, pig manure, grass 54 [18, 54]b Herbinix hemicellulosilytica T3/55T 100 LN626355
 Herbinix luporum SD1DT 51.255499 6.396524 Liquid pump/wet fermentation Maize, pig manure, grass 54 [18, 55]b Herbinix luporum SD1DT 100 LN626359
 Peptoniphilaceae bacterium str. ING2-D1G Peptoniphilaceae 51.255499 6.396524 Lab-scale CSTR/wet fermentation Maize silage, pig manure, cattle manure 37 [22] Peptoniphilus indolicus DSM 20464T 90.6 AY153431
 Propionispora sp. 2/2-37 Veillonellaceae 48.3924 11.7569 CSTR, wet fermentation Maize silage, grass 38 [18]e Propionispora hippei KST 95.0 NR036875
 Bacillus thermoamylovorans 1A1 Bacillaceae 48.3924 11.7569 CSTR, wet fermentation Maize silage, pig manure 52 [18]f Bacillus thermoamylovorans DKPT 99.0 NR029151
 Proteiniphilum saccharofermentans M3/6T Porphyromonadaceae 52.3871 13.0993 Lab-scale UASS/wet fermentation Maize silage, wheat straw 37 [26] Proteiniphilum saccharofermentans M3/6T 100 KP233809
 Fermentimonas caenicola ING2-E5BT 51.255499 6.396524 Lab-scale CSTR/wet fermentation Maize silage, pig manure, cattle manure 37 Fermentimonas caenicola ING2-E5BT 100 KP233810
 Petrimonas mucosa ING2-E5AT 51.255499 6.396524 Lab-scale CSTR/wet fermentation Maize silage, pig manure, cattle manure 37 Petrimonas mucosa ING2-E5AT 100 KP233808
 Defluviitoga tunisiensis L3 Petrotogaceae 51.255499 6.396524 Liquid pump/wet fermentation Maize, pig manure, grass 54 [27] Defluviitoga tunisiensis SulfLac1T 99.9 NR122085
Archaea
 Methanobacterium formicicum MFT Methanobacteriaceae DSMZa 37 [50] Methanobacterium formicicum MFT 100 NR115168
 Methanobacterium formicicum Mb9 49.878359 6.481390 CSTR, wet fermentation Maize silage, grass, cattle manure 40 [21] Methanobacterium formicicum MFT 100 NR115168
 Methanobacterium sp. Mb1 49.512893 7.083068 CSTR, wet fermentation Maize silage, grass, cattle manure 39 Methanobacterium formicicum MFT 98.0 NR115168
 Methanobacterium congolense Buetzberg 53.736687 10.083949 CSTR, dry fermentation Household garbage 37 [18]g Methanobacterium congolense CT 99.0 NR028175
 Methanothermobacter wolfeii SIV6 51.255499 6.396524 Liquid pump/wet fermentation Maize, pig manure, grass 54 [18]h Methanothermobacter wolfeii VKM B-1829T 100 NR040964.1
 Methanoculleus bourgensis MS2T Methanomicrobiaceae DSMZ 37 [49] Methanoculleus bourgensis MS2T 100 NR042786
 Methanoculleus chikugoensis L21-II-0 51.255499 6.396524 Lab-scale CSTR/wet fermentation Maize silage, pig manure, cattle manure 37 This study Methanoculleus chikugoensis MG62T 99.0 NR028152
  1. CSTR, continuously stirred tank reactor; UASS, upflow anaerobic solid-state reactor
  2. aDSMZ, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
  3. bIsolation strategy number four described in more detail by [18]
  4. cIsolation strategy number eight (a) published in [18]
  5. dIsolation strategy number five published in [18]
  6. eIsolation strategy number seven published in [18]
  7. fIsolation strategy number two published in [18]
  8. gIsolation strategy number ten published in [18]
  9. hIsolation strategy number eleven published in [18]