Gene information
|
Expression information
|
---|
Microarray Probe
|
PvGene
|
Clade/Gene
|
Cluster
|
0 h
|
Induced
|
Non-induced
|
Compare
|
---|
6 h
|
1 Day
|
3 Days
|
7 Days
|
1 Day
|
7 Days
|
1 Day
|
7 Days
|
---|
Expansin
|
AP13ITG71529_at
|
Pavir.Aa00711
|
α-Expansin
|
4
|
260
|
1176
|
3260
|
2120
|
1002
|
2025
|
737
|
1
|
0
|
KanlowCTG26349_s_at
|
Pavir.Aa00711
|
α-Expansin
|
4
|
185
|
572
|
1927
|
942
|
603
|
1215
|
397
|
1
|
0
|
AP13ITG57935_at
|
Pavir.Aa00840
|
β-Expansin
|
5
|
3692
|
3666
|
134
|
71
|
40
|
16,793
|
8354
|
− 1
|
0
|
AP13CTG27439_s_at
|
Pavir.Ia02285
|
β-Expansin
|
5
|
2721
|
5043
|
2475
|
440
|
346
|
13636
|
6467
|
− 1
|
0
|
CESA
|
AP13.12059.m00001_s_at
|
Pavir.Ca01073
|
OsCESA1
|
2
|
1771
|
6165
|
4553
|
3517
|
2713
|
3351
|
2759
|
0
|
0
|
AP13CTG00607_s_at
|
Pavir.Ba01088
|
OsCESA3
|
4
|
1160
|
2574
|
2285
|
3019
|
1894
|
1391
|
1362
|
0
|
0
|
AP13CTG25870_s_at
|
Pavir.J35010
|
OsCESA8
| |
2702
|
4804
|
3832
|
4513
|
3535
|
3877
|
3669
|
0
|
0
|
KanlowCTG12907_s_at
|
Pavir.J30974
|
OsCESA4
|
16
|
51
|
30
|
98
|
94
|
114
|
58
|
65
|
1
|
1
|
KanlowCTG34110_at
|
Pavir.Ib00804
|
OsCESA7
|
0
|
8
|
11
|
9
|
10
|
9
|
9
|
8
|
0
|
0
|
AP13CTG25049_s_at
|
Pavir.Bb02205
|
OsCESA9
|
0
|
52
|
44
|
56
|
52
|
66
|
56
|
56
|
0
|
0
|
KanlowCTG15421_s_at
|
Pavir.Ea00385
|
OsCESA1
|
15
|
1795
|
1003
|
1622
|
2469
|
1176
|
1956
|
1810
|
0
|
0
|
OTHSWCTG06249_s_at
| |
OsCESA5
|
7
|
820
|
904
|
1810
|
803
|
1300
|
939
|
1094
|
1
|
0
|
AP13CTG06255_s_at
|
Pavir.J12858
|
OsCESA2
|
16
|
917
|
549
|
827
|
1418
|
774
|
941
|
868
|
0
|
0
|
COBRA
|
AP13CTG00322_s_at
|
Pavir.Ia00526
|
COB
|
2
|
3061
|
6252
|
5466
|
3902
|
3750
|
4715
|
3158
|
0
|
0
|
AP13ITG43381_at
|
Pavir.Ia00525
|
COB
|
5
|
1771
|
2628
|
697
|
164
|
697
|
3370
|
4215
|
0
|
− 1
|
Cellulose-like synthases
|
AP13CTG01955_at
|
Pavir.Ia02025
|
CSLA
|
16
|
204
|
201
|
246
|
269
|
213
|
411
|
224
|
0
|
0
|
AlamoCTG01742_s_at
|
Pavir.Ib01792
|
CSLA
|
12
|
86
|
145
|
279
|
474
|
394
|
207
|
233
|
0
|
1
|
AP13CTG06284RC_s_at
|
Pavir.Ia00426
|
CSLC
|
13
|
350
|
151
|
187
|
161
|
144
|
228
|
133
|
0
|
0
|
AP13CTG27051_s_at
|
Pavir.Fa01312
|
CSLC
|
5
|
133
|
251
|
39
|
25
|
32
|
147
|
98
|
− 1
|
0
|
KanlowCTG19494_s_at
|
Pavir.Fb00422
|
CSLF
|
5
|
335
|
304
|
327
|
150
|
134
|
154
|
125
|
1
|
0
|
KanlowCTG37527_s_at
|
Pavir.Ba00688
|
CSLF
|
0
|
164
|
212
|
199
|
147
|
190
|
202
|
174
|
0
|
0
|
Callose synthesis
|
KanlowCTG45113_s_at
|
Pavir.Aa00017
|
Callose synthase
|
16
|
215
|
100
|
551
|
879
|
379
|
241
|
233
|
1
|
0
|
AP13ITG74190RC_at
|
Pavir.Ib02063
|
Callose-binding
|
11
|
64
|
83
|
178
|
116
|
66
|
57
|
48
|
1
|
0
|
Cell wall precursor
|
KanlowCTG00021_s_at
|
Pavir.Ia00394
|
UGD
|
1
|
2487
|
8192
|
2541
|
1710
|
2633
|
4416
|
2852
|
0
|
0
|
AP13CTG07489_at
|
Pavir.Ea03089
|
UXS
|
2
|
416
|
1017
|
583
|
537
|
605
|
637
|
637
|
0
|
0
|
KanlowCTG22514_s_at
|
Pavir.Ea03089
|
UXS
|
0
|
530
|
1003
|
872
|
820
|
780
|
614
|
813
|
1
|
0
|
AP13CTG10419_s_at
|
Pavir.Gb00500
|
UXE
|
1
|
792
|
1820
|
696
|
695
|
809
|
927
|
934
|
0
|
0
|
AP13CTG28681_s_at
|
Pavir.Ba03802
|
UXE
|
3
|
186
|
396
|
335
|
329
|
488
|
374
|
300
|
0
|
1
|
AP13CTG00023_s_at
|
Pavir.Gb00638
|
UXT
|
4
|
63
|
249
|
409
|
338
|
1273
|
72
|
156
|
1
|
1
|
KanlowCTG06720_s_at
|
Pavir.Ia00627
|
UXT
|
2
|
695
|
1531
|
855
|
1053
|
1227
|
588
|
666
|
1
|
1
|
AP13CTG08328RC_s_at
|
Pavir.Ab02692
|
UER
|
5
|
1017
|
969
|
566
|
639
|
474
|
2925
|
1380
|
− 1
|
0
|
Arabinoxylan (AX) and glucuronoarabinoxylan (GAX) synthesis (backbone)
|
AP13CTG08590_s_at
|
Pavir.J27018
|
IRX9
|
3
|
280
|
635
|
729
|
481
|
563
|
627
|
441
|
0
|
0
|
AP13ITG73683_s_at
|
Pavir.Ib01337
|
IRX9
|
5
|
461
|
385
|
195
|
116
|
124
|
469
|
345
|
− 1
|
− 1
|
AlamoCTG02760_s_at
|
Pavir.Ea01094
|
IRX9L
|
12
|
136
|
139
|
207
|
370
|
362
|
87
|
174
|
1
|
1
|
AP13ITG60236_at
|
Pavir.Ea01094
|
IRX9L
|
16
|
194
|
153
|
292
|
666
|
548
|
148
|
227
|
1
|
1
|
AP13ITG74502_x_at
|
Pavir.J37721
|
IRX14L
|
1
|
221
|
2740
|
402
|
234
|
121
|
513
|
208
|
0
|
0
|
KanlowCTG18373_s_at
|
Pavir.J06597
|
IRX14L
|
1
|
4068
|
5793
|
3770
|
2684
|
3800
|
3711
|
4190
|
0
|
0
|
AP13CTG44601_s_at
|
Pavir.Ea03872
|
IRX10
|
2
|
388
|
3191
|
1018
|
714
|
930
|
609
|
896
|
0
|
0
|
AP13CTG03198_s_at
|
Pavir.J03056
|
IRX10
|
2
|
443
|
3104
|
851
|
809
|
882
|
1413
|
1262
|
− 1
|
− 1
|
Arabinoxylan (AX) and glucuronoarabinoxylan (GAX) synthesis (side chain)
|
AP13ITG71461_at
|
Pavir.Aa01690
|
GUX
|
3
|
74
|
274
|
261
|
122
|
419
|
184
|
226
|
0
|
0
|
KanlowCTG10196_x_at
|
Pavir.J03459
|
GUX
|
1
|
135
|
419
|
170
|
165
|
135
|
353
|
303
|
0
|
0
|
AP13CTG04376_s_at
|
Pavir.Aa01745
|
XAX1
|
5
|
146
|
236
|
85
|
73
|
64
|
330
|
217
|
− 1
|
0
|
AP13ITG43704_at
|
Pavir.Ea01415
|
XAT1
|
13
|
136
|
29
|
19
|
15
|
20
|
73
|
53
|
− 1
|
0
|
AP13.12340.m00010_s_at
|
Pavir.Da01068
|
XAT1
|
0
|
179
|
147
|
173
|
190
|
146
|
212
|
227
|
0
|
− 1
|
PF02458 (candidates for forming the ester linkages in GAX)
|
AP13CTG59034RC_at
|
Pavir.Gb00939
| |
12
|
22
|
34
|
103
|
280
|
171
|
27
|
30
|
0
|
1
|
AP13ITG73138_at
|
Pavir.Fa02187
| |
5
|
190
|
143
|
60
|
27
|
106
|
68
|
135
|
0
|
0
|
KanlowCTG26994RC_at
|
Pavir.Aa01433
| |
12
|
73
|
138
|
256
|
626
|
354
|
98
|
105
|
1
|
1
|
AP13ITG72773_s_at
|
Pavir.Eb00373
| |
13
|
1226
|
269
|
126
|
89
|
117
|
509
|
311
|
− 1
|
0
|
Pectin biosynthesis
|
AP13CTG05511_s_at
|
Pavir.Ba00640
|
ARAD1
|
1
|
79
|
95
|
65
|
80
|
75
|
131
|
80
|
− 1
|
0
|
AP13CTG06439_at
|
Pavir.Aa00624
|
GALS1
|
4
|
114
|
422
|
512
|
481
|
490
|
212
|
186
|
1
|
1
|
AP13CTG14035_at
|
Pavir.J20866
|
RGXT4
|
4
|
129
|
211
|
228
|
254
|
217
|
291
|
219
|
− 1
|
0
|
AP13ITG63440_at
|
Pavir.J14339
|
RGXT4
|
4
|
120
|
209
|
247
|
280
|
235
|
304
|
239
|
0
|
0
|
AP13CTG02428_s_at
|
Pavir.Ba01601
|
GAUT1
|
0
|
1418
|
1296
|
1565
|
1607
|
1332
|
1562
|
1462
|
0
|
0
|
AP13CTG18174_at
|
Pavir.Ba00237
|
GAUT7
|
2
|
118
|
331
|
247
|
232
|
125
|
447
|
315
|
− 1
|
− 1
|
KanlowCTG43804_at
|
Pavir.Fb01281
|
GAUT4
|
16
|
90
|
77
|
138
|
150
|
95
|
206
|
162
|
− 1
|
− 1
|
AP13CTG09682_s_at
|
Pavir.Ab01751
|
GAUT8
|
5
|
609
|
755
|
369
|
449
|
225
|
573
|
371
|
− 1
|
− 1
|
Pectin esterases
|
AP13ITG41170_at
|
Pavir.Ea01491
|
PME
|
5
|
699
|
484
|
73
|
80
|
72
|
104
|
97
|
0
|
0
|
AP13CTG29622_at
|
Pavir.Ia02028
|
PME
|
13
|
55
|
13
|
7
|
9
|
26
|
12
|
12
|
0
|
0
|
AP13ITG67053RC_at
|
Pavir.Eb02306
|
PAE
|
5
|
83
|
92
|
27
|
15
|
10
|
602
|
200
|
− 1
|
0
|
AP13CTG10801RC_at
|
Pavir.Ba00334
|
PAE
|
9
|
838
|
495
|
289
|
407
|
78
|
852
|
353
|
− 1
|
0
|
KanlowCTG09579_s_at
|
Pavir.Eb04062
|
PAE
|
1
|
174
|
290
|
170
|
167
|
145
|
280
|
180
|
− 1
|
0
|
Wall structural protein
|
AP13CTG23898_at
|
Pavir.J33924
|
AGP13
|
5
|
923
|
976
|
127
|
126
|
121
|
774
|
399
|
− 1
|
0
|
AP13ITG74104_at
|
Pavir.J33924
|
AGP13
|
5
|
120
|
158
|
13
|
13
|
16
|
174
|
67
|
− 1
|
− 1
|
AP13ITG53973_s_at
|
Pavir.Eb02706
|
FLA
|
1
|
315
|
1924
|
529
|
352
|
111
|
188
|
146
|
1
|
0
|
- Expression values at each data point represent the mean of three biological replicates. Cluster represents the expression groups of filtered genes in induced samples defined by self-organizing map (SOM) method (Fig. 6a). Differential expression genes between induced and non-induced samples on 1 and 7 days were identified by the linear model in LIMMA [84]; − 1 (represented by bold italic), significant lower expression in induced samples than in non-induced samples, 1 (represented by italic), significant higher expression in induced samples than in non-induced samples, 0, no change between induced and non-induced samples