Table 4 A summary of transcripts predicted to be expressed in each tissue type
From: Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
Tissue type | #Expressed genes | #Transcripts | #AS transcript | # Tissue-specific transcripts | #CW-related transcripts | #lncRNAs | #TFs |
|---|---|---|---|---|---|---|---|
Crown | 31,256 (1177) | 41,772 (17,769) | 23,620 (11,506) | 128 (106) | 916 (155) | 1156 (1053) | 1813 (617) |
Leaf blade | 29,081 (1219) | 39,747 (17,626) | 23,306 (11,654) | 248 (213) | 651 (115) | 1190 (1090) | 1642 (592) |
Leaf sheath | 30,517 (1222) | 41,689 (18,418) | 24,251 (12,198) | 215 (181) | 787 (143) | 1191 (1086) | 1731 (616) |
Node | 31,294 (1243) | 42,329 (18,421) | 24,262 (12,070) | 170 (138) | 889 (153) | 1197 (1090) | 1798 (626) |
VB | 28,003 (1006) | 36,926 (15,261) | 21,247 (9934) | 114 (94) | 721 (120) | 949 (858) | 1526 (523) |
Inflorescence | 31,365 (1258) | 42,298 (18,468) | 23,966 (11,900) | 219 (188) | 890 (143) | 1260 (1151) | 1817 (614) |
Root | 32,133 (1255) | 43,787 (19,288) | 24,951 (15,563) | 407 (294) | 966 (180) | 1227 (1126) | 1867 (663) |
Seed DAP | 33,174 (1458) | 45,985 (21,229) | 26,328 (13,768) | 1007 (839) | 885 (163) | 1460 (1335) | 1925 (679) |
Seed germ | 30,905 (1212) | 42,015 (18,519) | 24,101 (12,100) | 317 (260) | 867 (162) | 1199 (1094) | 1708 (593) |
Shoot | 33,067 (1350) | 45,553 (20,350) | 26,095 (13,330) | 365 (288) | 979 (167) | 1342 (1224) | 1962 (691) |
Shared by all tissue types | 22,948 (729) | 28,623 (10,666) | 16,245 (6743) | N/A | 490 (67) | 686 (614) | 1088 (351) |